Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 10 Aligned Residues 396 % Identity 21% Template c1gg4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution Resolution 2.30 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		G	L	S	C	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	.	.	.	T	R	M	T	P	P	G	L	D	K	L	P	E	A	V	E	R	H	T	G	S	L	.	.	.	.	.	.	.	.	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S	L	S	A	A	A
Query Conservation																					.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																							.	.	.	.	.	.	.	.																											.	.
Template Conservation																																																																																.	.
Template Sequence		S	V	T	L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	I	T	L	D	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D	I	D	L	P	Q	L	I	V	.	.
Template Known Secondary structure												T	T					S						S				S		G	G	G			T	T							B		S	S		B	T	T	T	T							T	T							S	S			S		S	S						.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		87	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure													.																																											.	.	.	.									.
Query SS confidence													.																																											.	.	.	.									.
Query Sequence		D	A	G	I	E	I	V	G	D	I	E	.	L	F	C	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	V	G	V	G	G	N	.	.	.	.	I	G	L	P	A	L	M	L	.	L	D	D	E	C	E	L	Y	V	L	E	L	S
Query Conservation													.																																											.	.	.	.									.
Alig confidence													.																																											.	.	.	.									.
Template Conservation
Template Sequence		K	D	T	R	L	A	F	G	E	L	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	X	T	A	A	I	L	S	Q	C	G	N	T	L	Y	T	A	G	N	L	N	N	D	I	G	V	P	X	T	L	L	R	L	T	P	E	Y	D	Y	A	V	I	E	L	G
Template Known Secondary structure		S																	S										S	S														T	T	T	S							T	T			S	T	T							T	T			T	T		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.
Predicted Secondary structure												.	.	.	.																																				.	.	.																			.	.
Query SS confidence												.	.	.	.																																				.	.	.																			.	.
Query Sequence		S	F	Q	L	E	T	T	S	S	L	.	.	.	.	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F	G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	.	.	.	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	R	G	.	.	A	D	E	R	C	V	S	F
Query Conservation												.	.	.	.																																				.	.	.																			.	.
Alig confidence												.	.	.	.											.	.	.	.	.	.	.	.	.																	.	.	.																			.	.
Template Conservation																										.	.	.	.	.	.	.	.	.
Template Sequence		A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	.	.	.	.	.	.	.	.	.	A	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	X	N	A	D	N	N	D	W	L	N	W	Q	S	V	I	G	S	R	K	V	W	R	F
Template Known Secondary structure			S	S	S	S												S								.	.	.	.	.	.	.	.	.												G	G	G	G	G			T	T							T	T	B											T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		232	.	.	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		G	V	N	M	G	D	Y	.	.	.	.	.	H	L	N	H	Q	Q	G	E	T	W	L	R	V	K	G	E	K	V	L	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.
Template Conservation
Template Sequence		S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	X	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N	L	K	A	V	P	G	R	L	F	P
Template Known Secondary structure			S	S		T	T		S	B									S	S	S								T	T									S	S	S	T																T	T											T	T					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.											.	.	.	.	.																			.
Query SS confidence																															.											.	.	.	.	.																			.
Query Sequence		V	L	E	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	.	V	D	G	T	L	H	L	L	L	G	.	.	.	.	.	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	.	N	V	R	L	Y	C	F	G	R	D	G	A	Q	L	A	A
Query Conservation																															.											.	.	.	.	.																			.
Alig confidence																															.											.	.	.	.	.																			.
Template Conservation
Template Sequence		I	Q	L	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	X	T	A	A	V	Q	V	L	A	E	X	P	G	Y	R	V	L	V	V	G	D	X	A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A	A	G	I	D	R	V	L	S	V	G	K	Q	S	H	A	I	S	T
Template Known Secondary structure						T	T								S																	S	S	S													T	T																	T		S						S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.			.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		L	R	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	.	.	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E	L
Query Conservation																													.	.
Alig confidence					.																								.	.						.	.	.			.	.	.	.	.	.	.	.	.
Template Conservation					.																															.	.	.			.	.	.	.	.	.	.	.	.
Template Sequence		A	S	G	.	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	.	.	.	G	S	.	.	.	.	.	.	.	.	.	R	S	A	A	X	E	E	V	V	R	A	L
Template Known Secondary structure			T	T	.	S					S	S																S	S							.	.	.			.	.	.	.	.	.	.	.	.	G	G	G	T	T
Template Predicted Secondary structure					.																															.	.	.			.	.	.	.	.	.	.	.	.
Template SS confidence
		400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.				.	.										.	.	.	.	.	440	.	.	.	.	.	.