Job Description P14900 Confidence 100.00% Date Thu Jan 5 11:34:07 GMT 2012 Rank 9 Aligned Residues 370 % Identity 22% Template c1e8cB_ PDB info PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli Resolution 2.00 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100											.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S	L	S	A	A	A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	.	.	.	.	.	.	.	.	.	.	R	E	A	Q	A	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N
Query Conservation																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E	X	H	G	V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S	D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I
Template Known Secondary structure		T	T		S							T	T	T			T	T						T	T							T	T													T	T		G	G	G	S	S							S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.																						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		V	G	V	G	G	N	I	G	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	M	L	L	D	D	E	C	E	L	Y	V	L	E	L	S	S	F	Q	L	.	.	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	P	F
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.																										.
Template Conservation																																																																																	.
Template Sequence		S	A	V	X	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	X	E	V	S	S	H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	G	.
Template Known Secondary structure						S	T	T		B			T	T			B			S		S	S																T	T															T	T	T	T	T	T		B		S									S								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.												.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	Q	Q	Y	R	A	A	K	L	R	I	Y	E	N	.	A	K	V	C	V	V	N	A	D	D	A	L	T	M	P	I	R	G	A	D	E	R	C	V	S	F	G	V	N	M	G	D	.	.	.	.	.	.	.	.	.	.	.	Y	H	L	N	H	Q	Q	G	E	T	W	L	R	V	K	G	E	K	V	L	N
Query Conservation																	.																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	X	E	H	Y	E	A	A	W	L	L	Y	S	E	H	H	C	G	Q	A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	X	E	D	H	I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S	W	G	D	G
Template Known Secondary structure		S													S	S	B								T	T	S								T	T		T	T						S	S	S				T	T	T		S												S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	.	.	V
Query Conservation																																																																															.	.
Alig confidence																																																														.																	.	.
Template Conservation																																																														.
Template Sequence		E	I	E	S	H	L	X	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	X	E	V	F	T	A	P	G	K	P	T	V	V	V	D	.	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C
Template Known Secondary structure							S		S																	T	T										G	G	G					T	T	S	S						T	T	S							.				S														T
Template Predicted Secondary structure																																																														.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		337	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370							.	.	.	.	.	.	.	.	.	380	.							.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure											.																										.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence											.																										.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		D	G	T	L	H	L	L	L	G	.	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	G	D	N	V	R	L	Y	C	F	.	.	.	.	.	.	G	R	D	G	A	Q	L	A	A	L	R	.	.	.	.	.	.	P	E	V	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q
Query Conservation											.																										.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence											.																										.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	K	L	W	C	V	F	G	C	G	G	D	R	D	K	G	K	R	P	L	X	G	A	I	A	E	E	F	A	D	V	A	V	V	T	D	D	N	P	R	T	E	E	P	R	A	I	I	N	D	I	L	A	G	X	L	D	A	G	H	A	K	V	X	E	G	R	A	E	A	V	T	C	A	V	X	Q	A	K
Template Known Secondary structure		S	S										S	S	S		S	T														S							S			B	T	S											T	T	S	S		T	T	S	S				S													S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.							.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		P	G	D	M	V	L	L	S	P	A	C	A	S	.	.	.	.	.	.	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E	L
Query Conservation															.	.	.	.	.	.
Alig confidence										.					.	.	.	.	.	.											.
Template Conservation										.																					.
Template Sequence		E	N	D	V	V	L	V	A	.	G	K	G	H	E	D	Y	Q	I	V	G	N	Q	R	L	D	Y	S	D	R	.	V	T	V	A	R	L	L	G	V	I
Template Known Secondary structure		T	T							.	S		T	T							T	T									.								T	S
Template Predicted Secondary structure										.																					.
Template SS confidence
		456	.	.	.	460	.	.	.		.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.