|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | M | S | T | T | L | F | K | D | F | T | F | E | A | A | H | R | L | P | H | V | P | E | G | H | K | C | G | R | L | H | G | H | S | F | M | V | R | L | E | I | T | G | E | V | D | . |
. |
. |
. |
. |
P | H | T | G | W | I | I | D | F | A | E | L | K | A | A | F | K | P | T | Y | E | R | L | D | H | H | Y | L | N |
Query Conservation |   |
|
|   |   |   |
|   |
|   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |
|
|
|   |   |
|
|
|
|   |
|   |
|   |
|   |   |   |   |   |   |
| . | . | . | . | . |   |   |   |
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |
|   |   |   |
|
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |
| . | . | . | . | . | . |
|
|   |   |   |
|
|   |   |   |
|   |
|   |
|
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |
|
|
|
|   |   |
|   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . |
Template Sequence |   |
M | Q | D | T | I | F | L | K | G | M | R | F | Y | G | Y | H | . |
. |
. |
. |
. |
. |
G | A | L | S | A | E | N | E | I | G | Q | I | F | K | V | D | V | T | L | K | V | D | L | S | E | A | G | R | T | D | N | V | I | D | T | V | H | Y | G | E | V | F | E | E | V | K | S | I | M | E | G | . |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | S | S | S |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
| G | G | G | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | S | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
  |
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | I | P | G | L | E | N | P | T | S | E | V | L | A | K | W | I | W | D | Q | V | K | P | V | V | P | L | L | S | A | V | M | V | K |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |
Alig confidence |   |
. | . |
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . |   |   |   | . | . |   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|   |
Template Sequence |   |
. |
. |
K | A | V | . |
. |
N | L | L | E | H | L | A | E | R | I | A | N | R | I | N | S | Q | Y | N | R | V | M | E | T | K | V | R |
Template Known Secondary structure |   |
. | . | S |
|
| . | . | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . |
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
68 | . | 70 | |
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
  |