|   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | |
|
|
. | . | . | . | . | . | . | . | 70 | |
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . |  |  |  |  |
|
|
|
|
| . | . |  |  |  |
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | E | Q | V | M | Q | L | I | E | H | L | R | E | R | A | S | H | L | S | Y | T | A | E | R | P | L | R | I | M | E | V | C | G | G | H | T | H | A | I | F | K | F | G | L | D | Q | L | L | P | E | N | V | . |
. |
. |
E | F | I | H | G | P | G | C | P | . |
. |
V | C | V | L | P | M | G | R | I | D | T | C | V |
Query Conservation |   |
|   |
|   |
|   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|   |
|
|   |
|   |
|
|
|   |
|
|
|   |   |
| . | . | . |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|   |   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |   |
|
|   |   |
|
|   |
|
|   |
|   |
|   |
|
|
|   |   |
|
|
|   |   |   |
|   |
| . | . |   |   |
|
|   |   |   |
|
|   |   |
|   |
|
|   |
|
|   |
|
|
|
|   |
|
|
|   |
|   |   |   |
Template Sequence |   |
N | P | L | L | S | E | I | I | V | Q | A | A | R | E | M | E | G | E | A | K | A | A | G | A | K | G | I | N | L | V | G | I | C | C | T | G | N | E | V | L | M | R | Q | G | I | P | . |
. |
L | V | T | S | F | A | S | Q | E | L | A | I | C | T | G | A | I | D | A | M | C | V | D | V | Q | C | I | M | P | S | I | S |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  | T | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |
| G | G | G |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |
| S | S | S |
|
| T | T |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
| . | . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
284 | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | |
|
330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . |
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | A | S | H | P | E | V | I | F | C | T | F | G | D | A | M | R | V | P | G | K | Q | G | S | L | L | Q | A | K | A | R | G | A | D | V | R | I | V | Y | S | P | M | D | A | L | K | L | A | Q | E |
Query Conservation |   |
  |
|
|   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |
|
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |   |   |
|   |
|   |   |
Template Sequence |   |
A | V | A | E | C | Y | H | T | R | I | I | T | T | A | D | N | A | K | I | P | G | A | Y | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | D | Y | Q | T | A | T | A | I | E | S | A | K | T |
Template Known Secondary structure |   |
 |  |  | T | T | S | S |
|  |  |  |  |
| B | T | T | B |
|
| T | T | S |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
| G | G | G |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
362 | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 390 | . | . | . | . | . | . | . | . | . |
  |