 |
Job Description | P24192 | Confidence | 20.10% | Date | Wed Jan 25 15:20:44 GMT 2012 |
Rank | 70 | Aligned Residues | 88 |
% Identity | 16% | Template | c3o3nB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase; |
PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa
|
Resolution | 2.30 Å |
|
 |
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 | . | |
|
|
|
|
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
| . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
Query Sequence |   |
Y | R | A | P | E | Q | V | M | Q | L | I | E | H | L | R | E | R | A | S | H | L | S | Y | T | A | E | R | P | L | R | I | M | E | V | C | G | G | H | T | . |
. |
. |
. |
. |
. |
H | A | I | F | K | F | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | D | Q | L | L | P | E | N | V | . |
. |
. |
. |
. |
Query Conservation |   |
|
|
|   |
|   |
|   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |   |
|
|   |
|   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|
|
|   |   |
| . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
| . |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
Template Sequence |   |
F | M | R | K | E | E | H | T | E | L | V | K | D | L | I | A | K | L | N | A | M | P | E | E | V | C | S | G | K | K | V | L | . |
L | T | G | I | L | A | D | S | K | D | I | L | D | I | L | E | D | N | N | I | S | V | V | A | D | D | L | A | Q | E | T | R | Q | F | R | T | D | V | P | A | G | D | D | A | L | E | R |
Template Known Secondary structure |   |
S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
| B |
|
| S | S |  |  |  |  | . |  |  |  | S |
|
|
|
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  | T | T | T | G | G | G | T | S | S |
|
|
|
|
| S |
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  | . |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | |
. | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
  |
  |   |
|
|
|
62 | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | |
. | . | 80 | . | . | . | . | . | . | . | . | |
|
|
. | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  | . |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
E | F | I | H | G | P | G | C | P | V | C | V | L | P | M | G | . |
R | I | D | T | C | V | E | I | A | S | H | . |
. |
. |
P | E | V | I | F | C | T |
Query Conservation |   |
. | . | . |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   | . |   |
|
|   |
|
|   |
|
|   |   | . | . | . |   |   |
|
|
|   |
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|   |   |   |
Template Sequence |   |
L | A | R | Q | W | S | N | I | E | G | C | S | L | A | Y | D | P | K | K | K | R | G | S | L | I | V | D | E | V | K | K | K | D | I | D | G | V | I | F | C | M |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
| S |
| T | T | S |
|
| T | T |
| T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
281 | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|