Job Description P24192 Confidence 100.00% Date Wed Jan 25 15:20:44 GMT 2012 Rank 1 Aligned Residues 356 % Identity 38% Template c2z1dA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis Resolution 2.07 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	R	A	P	E	Q	V	M	Q	L	I	E	H	L	R	E	R	A	S	H	L	S	Y	T	A	E	R	P	L	R	I	M	E	V	C	G	G	H	T	H	A	I	F	K	F	G	L	D	Q	L	L	P	E	N	V	E	F	I	H	G	P	G	C	P	V	C	V	L	P	M	G	R	I	D	T	C	V	E	I
Query Conservation
Alig confidence																						.	.	.	.											.
Template Conservation																						.	.	.	.											.
Template Sequence		A	Y	R	S	R	E	V	A	M	K	L	V	E	K	I	R	E	E	A	K	.	.	.	.	T	L	D	G	E	I	R	I	M	H	.	V	G	T	H	E	D	T	V	T	R	H	G	I	R	S	L	L	P	E	N	V	K	V	V	S	G	P	G	C	P	V	C	I	T	P	V	E	D	I	V	A	M	Q	L	I
Template Known Secondary structure																					T	.	.	.	.	T		S	S							.											T	T					S		T	T										T	T	T	T	S
Template Predicted Secondary structure																						.	.	.	.											.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		86	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		A	S	H	.	.	.	.	.	P	E	V	I	F	C	T	F	G	D	A	M	R	V	P	G	K	Q	G	S	L	L	Q	A	K	A	R	G	A	D	V	R	I	V	Y	S	P	M	D	A	L	K	L	A	Q	E	N	P	T	R	K	V	V	F	F	G	L	G	F	E	T	T	M	P	T	T	A	I	T	L	Q	Q
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.
Template Conservation
Template Sequence		M	R	K	A	R	E	E	G	E	E	I	I	L	T	T	F	G	D	M	Y	K	I	P	T	P	M	G	S	F	A	D	L	K	S	E	G	F	D	V	R	I	V	Y	G	I	F	D	T	Y	R	I	A	K	E	N	P	D	K	T	V	V	H	F	S	P	G	F	E	T	T	T	A	P	A	A	G	M	L	N	V
Template Known Secondary structure								T	T									T	T	G	G	G				T	T									T	T							S	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	R	D	V	Q	N	F	Y	F	F	C	Q	H	I	T	L	I	P	T	L	R	S	L	L	E	Q	P	D	N	G	I	D	A	F	L	A	P	G	H	V	S	M	V	I	G	T	D	A	Y	N	F	I	A	S	D	F	H	R	P	L	V	V	A	G	F	E	P	L	D	L	L	Q	G	V	V	M	L	V
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		A	A	Q	E	E	L	E	N	F	K	I	Y	S	V	H	R	L	T	P	P	A	V	E	V	L	L	K	Q	G	T	V	.	F	Q	G	L	I	A	P	G	H	V	S	T	I	I	G	V	K	G	W	E	Y	L	T	E	K	Y	G	I	P	Q	V	V	A	G	F	E	P	N	D	V	L	M	A	I	L	M	L	I
Template Known Secondary structure						T		S	S																				T	S			.		S													T	T																			S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		Q	Q	K	I	A	A	H	S	K	V	E	N	Q	Y	R	R	V	V	P	D	A	G	N	L	L	A	Q	Q	A	I	A	D	V	F	C	V	N	G	D	S	E	W	R	G	L	G	V	I	E	S	S	G	V	H	L	T	P	D	Y	Q	R	F	D	A	E	A	H	F	R	P	A	P	Q	Q	V	C	D	.	.	D
Query Conservation																																																																															.	.
Alig confidence																																					.																																										.	.
Template Conservation																																					.
Template Sequence		R	M	Y	K	E	G	E	A	R	I	I	N	E	Y	E	R	A	V	K	Y	E	G	N	V	V	A	Q	K	M	I	D	K	F	F	E	.	V	V	D	A	K	W	R	A	L	G	V	F	P	K	S	G	L	E	L	R	K	E	W	K	D	F	E	I	R	S	F	Y	K	V	E	V	P	K	N	L	P	D	L	E
Template Known Secondary structure						T	T							S		T	T	T			T	T															.							T	T	T												G	G	G	G	G	G	B	G	G	G	T							S				S	S
Template Predicted Secondary structure																																					.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	A	R	C	G	E	V	L	T	G	K	C	K	P	H	Q	C	P	L	F	G	N	T	C	N	P	Q	T	A	F	G	A	L	M	V	S	S	E	G	A	C	A	A	W	Y	Q	Y	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	C	R	C	G	A	V	L	R	G	L	A	L	P	T	D	C	P	L	F	G	K	T	C	T	P	R	H	P	V	G	P	C	M	V	S	Y	E	G	T	C	Q	I	F	Y	K	Y	G	V
Template Known Secondary structure		T	T									T	S			G	G	G	S	T	T	B	T	T	T	B		S	S	S		S	S					S	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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