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Job DescriptionP05824
Confidence99.95%DateThu Jan 5 10:58:56 GMT 2012
Rank3Aligned Residues331
% Identity22%Templatec3auyB_
PDB info PDB header:recombinationChain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50. ........60.........70........
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Query Sequence  LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAE. . . ADMVRTGAARADLCARFSLKDTPAALR
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Template Sequence  LKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSFNYDTIITKGKKSVYVELDFEVNGNNYKII
Template Known Secondary structure  TT

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GGGTB
TT
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   7980.........90.........100.........110.........120....... ..130.........140.........150
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Query Sequence  WLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQI. . . . . . . . HGQHAHQLLTKPEHQKFLLDGYA
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Template Sequence  REYDSG. . . . . . . . . RGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLL
Template Known Secondary structure  TT.........TT
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   86...90. ........100.........110.........120.........130.........140.........150......
 
   151........160.........170.........180.........190.........200.........210.........220.........230
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Query Sequence  NETSLLQEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNA
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Template Sequence  GIDEFE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T..........................................................................
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   157..160..
 
   231........240.........250.........260.........270.........280.........290.........300.........310
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Query Sequence  LALMADGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQIS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . K
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   163
 
   311........320.........330.........340.........350.........360.........370.........380.........390
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Query Sequence  LARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPH
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Template Sequence  CYQKMGEIVKEYEKRLERIEGELNYNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPY
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TTTTTTTTTTT
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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   391........400.........410.........420.........430.........440......... 450.........460.......
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Query Sequence  GQFTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITAR. . . KMETPALIFDEVDVGISG
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Template Sequence  SFVELTKDFEVRVHAPNGVLT. . . . . . . . . . . . . . . . IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDE
Template Known Secondary structure  STTTTT................GGGS
SS

SSTTTT

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   891........900.........910. ........920.........930.........940.........950....
 
   468.470.........480.........490.........500.........510
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Query Sequence  PTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKETD
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Template Sequence  NRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGN
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GGGGGG
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   955....960.........970.........980.........990.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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