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Job DescriptionP05824
Confidence99.87%DateThu Jan 5 10:58:56 GMT 2012
Rank11Aligned Residues209
% Identity24%Templatec1oxtB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10 .........20... ......30.........40.........50.........60.........70
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Query Sequence  MLAQLTISNF. . . . . . . . . AIVRELEIDFHSG. MTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSL
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Template Sequence  MVR. IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL. . . . . . . . . . . . . . . . . . . . . . . . .
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.GGGT
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   1.. ......10.........20.........30.........40.........50....
 
   71........80.........90.........100.........110.........120.........130.........140.........150
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Query Sequence  KDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL
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STTTTSS
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   55....60.........70.........80.........90.........100.......
 
   151........160.........170.........180.........190.........200.........210.........220.........230
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Query Sequence  NETSLLQEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNA
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Template Sequence  TNMKMSKEEIRKRVEEVAKILDIH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   108.110.........120.........130.
 
   231........240.........250.........260.........270.........280.........290.........300.........310
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Query Sequence  LALMADGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQIS
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   311........320.........330.........340.........350.........360.........370.........380.........390
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Query Sequence  LARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPH
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   391........400.........410.........420.........430.........440.........450.........460.........470
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Query Sequence  GQFTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HVLNHFPRELSGGQQQRVALARALV. . . . KDPSLLLLDEPFSNLDARMR
Template Known Secondary structure  ...............................GGTTS
GGGS
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   132.......140.........150...... ...160.........170......
 
   471........480.. .......490.... .....500.........510.......
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Query Sequence  AVVGKLLRQLGE. . STQVMCVTHLPQ. VAGCGHQHYFVSKETDGAMTETH
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Template Sequence  DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV. . . . KGKLVQV
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   177..180.........190.........200.........210..... ....220..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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