Job Description P76198 Confidence 54.48% Date Thu Jan 5 12:20:25 GMT 2012 Rank 7 Aligned Residues 396 % Identity 9% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	T	P	F	I	L	A	V	L	C	I	Y	F	S	Y	F	L	H	G	I	S	V	I	T	L	A	Q	N	M	S	S	L	A	E	K	F	S	T	D	N	A	G	I	A	Y	L	I	S	G	I	G	L	G	R	L	I	S	I	L	F	F	G	V	I	S	D	K	F	G	R	R	A	V	I	L	M	A	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	M	R	V	D	G	F	A	M	L	Y	T	G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	N	D	N	K	D	E	F	Y	L	L	V	L
Template Known Secondary structure		T																											S						S	T	T	B			S																													S	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	L	L	F	F	F	G	I	P	A	C	P	N	L	T	L	A	Y	G	L	A	V	C	V	G	I	A	N	S	A	L	D	T	G	G	Y	P	A	L	M	E	C	F	P	K	A	S	G	S	A	V	I	L	V	K	A	M	V	S	F	G	Q	M	F	Y	P	M	L	V	S	Y	M	L	L	N	N	I	W	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K	R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	G
Template Known Secondary structure												T	B		S	S										T	T									T	T	T	T	S																																S	S			S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	G	L	I	I	P	G	I	L	F	V	L	I	T	L	M	L	L	K	S	K	F	P	S	Q	L	V	D	A	S	V	T	N	E	L	P	Q	M	N	S	K	P	L	V	W	L	E	G	V	S	S	V	L	F	G	V	A	A	F	S	T	F	Y	V	I	V	V	W	M	P	K	Y	A	M	A	F	A	G	M
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	G	A	P	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	L	Y	A	P	V	G
Template Known Secondary structure																							T		T	T	S		T									S										T													.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.														250	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	E	A	L	K	T	I	S	Y	Y	S	M	G	S	L	V	C	V	F	I	F	A	A	L	L	K	K	M	V	R	P	I	W	A	N	V	F	N	S	A	L	A	T	I	T	A	A	I	I	Y	L	Y	P	S	P	L	V	C	N	A	G	A	F	V	I	G	F	S	A	A	G	G	I	L	Q	L	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V
Template Known Secondary structure		G		S																							T			B																						T	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		327	.	.	330	.	.	.	.	.														.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.						.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		S	V	M	S	E	F	F	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	A	K	V	T	S	I	Y	M	M	M	G	G	L	A	N	F	V	I	P	L	I	T	G	Y	L	S	N	.	.	.	.	.	I	G	L	Q	Y	I	I	V	L	D	F	T	F	A	L	L	A	L	I	T	A	I	I	V
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A	G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y
Template Known Secondary structure							S			S	S				B	G	G	G		S	S		T	T	T	S														T	T	T		T	T	S																T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	R	Y	Y	R	V	F	I	I	P	E	N	D	V	R	F	G	E	R	K	F	C	T	R	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	Q	P	S	N	W	Q	Y	S	A	G	G	I	V
Template Known Secondary structure											S								S	T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.