Job Description P76198 Confidence 99.97% Date Thu Jan 5 12:20:25 GMT 2012 Rank 3 Aligned Residues 373 % Identity 12% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	F	I	L	A	V	L	C	I	Y	F	S	Y	F	L	H	G	I	S	V	I	T	L	A	Q	N	M	S	S	L	A	E	K	F	S	T	D	N	A	G	I	A	Y	L	I	S	G	I	G	L	G	R	L	I	S	I	L	F	F	G	V	I	S	D	K	F	G	R	R	A	V	I	L	M	A	V	I	M	Y
Query Conservation
Alig confidence																					.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	.	.	.	.	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y
Template Known Secondary structure			T	T	T																.	.	.	.														T	T			T	T													T	T											S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		L	L	F	F	F	G	I	P	A	C	.	.	.	P	N	L	T	L	A	Y	G	L	A	V	C	V	G	I	A	N	S	A	L	D	T	G	G	Y	P	A	L	M	E	C	F	P	K	A	S	G	S	A	V	I	L	V	K	A	M	V	S	F	G	Q	M	F	Y	P	M	L	V	S	Y	M	L	L	N	N	I	W
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		A	L	G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V
Template Known Secondary structure							T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																															.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	Y	G	L	I	I	P	G	I	L	F	V	L	I	T	L	M	L	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	F	P	S	Q	L	V	D	A	S	V	T	N	E	L	P	Q	M	N	S	K	P	L	V	W	L	E	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R
Template Known Secondary structure												S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	S	V	L	F	G	V	A	A	F	S	T	F	Y	V	I	V	V	W	M	P	K	Y	A	M	A	F	A	G	M	S	E	A	E	A	L	K	T	I	S	Y	Y	S	M	G	S	L	V	C	V	F	I	F	A	A	L	L	K	K	M	V	R	P	I	W	A	N	V	F	N	S	A	L	A	T	I	T	A	A
Query Conservation
Alig confidence																																																																			.	.
Template Conservation																																																																			.	.
Template Sequence		W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	.	.	V	L	A	A	Y	A	L	I	A	M	A	L	C
Template Known Secondary structure																													S	T	T																															S					.	.
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	Y	L	Y	P	S	P	L	V	C	N	A	G	A	F	V	I	G	F	S	A	A	G	G	I	L	Q	L	G	V	S	V	M	S	E	F	F	P	K	S	K	A	K	V	T	S	I	Y	M	M	M	G	G	L	A	N	F	V	I	P	L	I	T	G	Y	L	S	N	I	G	L	Q	Y	I	I	V	L	D	F
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		L	I	S	A	F	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	E	L	I
Template Known Secondary structure							S																	T	T											S	S		G	G	G					.	.							G	G	G																	T	S	S	G	G	G	G
Template Predicted Secondary structure																																														.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	L	L	A	L	I	T	A	I	I	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	L	C	F	A	V	I	F	I	F	A	R	F
Template Known Secondary structure														T	S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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