 |
Job Description | P30852 | Confidence | 37.88% | Date | Thu Jan 5 11:46:33 GMT 2012 |
Rank | 325 | Aligned Residues | 102 |
% Identity | 10% | Template | c3sz8D_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; |
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
|
Resolution | 2.05 Å |
|
 |
  |   |
58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | S | I | E | S | S | L | C | W | L | E | Q | P | N | H | H | L | I | P | A | D | S | E | F | Y | P | P | Q | L | L | A | T | T | D | Y | P | G | A | L | F | V | E | G | E | L | H | A | L | H | S | F | Q | L | A | V | V | G | S | R | A | H | S | W | Y | G | E | R | W | G | R | L | F | C | E | T | L | A | T | R | G |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |
|   |   |   |   |   |
|
|   |   |   |
| . | . |
|   |   |
|   |   |   |
|
|   |
|   |   |   |
|
|   |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |
|   |   | . | . | . | . | . | . |
|
|   |   |
|
|   |   |
|
Template Sequence |   |
E | G | L | K | I | F | A | E | V | K | A | R | F | G | V | P | V | I | T | . |
. |
D | V | H | E | A | E | Q | A | A | P | V | A | E | I | A | D | V | L | Q | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | A | F | L | A | R | Q | T | D | . |
. |
. |
. |
. |
. |
L | V | V | A | I | A | K | A | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . |  |
|
| S | G | G | G |  |  |  |  |  |  |  |
| S |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| G | G | G | T | T |
|  |  | . | . | . | . | . | . |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | |
|
. | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 120 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 130 |
  |
  |   |
138 | . | 140 | . | . | |
|
. | . | . | . | . | . | . | 150 | . | |
|
. | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
Predicted Secondary structure |   |
|  |  |  |
| . | . |
|
|
|
|
|  |  |  |  | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | I | T | S | . |
. |
G | L | A | R | G | I | D | G | V | . |
. |
A | H | K | A | A | L | Q | V | N | G | V | S | I | A | V | L | G | N | G | L | N | T | I | H | P | R | R | H | A | R | L |
Query Conservation |   |
  |   |
|
|
| . | . |
|   |
|   |
|
|
|   |   | . | . |
|
|   |   |
|
|   |   |   |
|   |
|
|
|
|
|   |   |
|
|
|   |   |
|
|   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |
|
|   |   |
|   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|
|   |   |
|   |
|
|   |
|
|
|   |
|
|   |   |   |   |   |   |
|
|
Template Sequence |   |
K | P | V | N | V | K | K | P | Q | F | M | S | P | T | Q | L | K | H | V | V | S | K | C | G | E | V | G | N | D | R | V | M | L | C | E | R | G | S | S | F | G | Y | D | N | L | V | V | D | M |
Template Known Secondary structure |   |
S |
|  |  |  |  |
|
| T | T | S |
| T | T | S |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
|
|  |  |
| S | S | S |
|  |  |
|
| T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|