Job Description P30852 Confidence 100.00% Date Thu Jan 5 11:46:33 GMT 2012 Rank 1 Aligned Residues 344 % Identity 33% Template c3majA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009 Resolution 2.05 Å

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		1	.	.	.	.	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		M	V	D	T	E	I	.	.	W	L	R	L	M	S	I	S	S	L	Y	G	D	D	M	V	R	I	A	H	W	V	A	K	Q	S	H	I	D	A	V	V	L	Q	Q	T	G	L	T	L	R	Q	A	Q	R	F	L	S	F	P	R	K	S	I	E	S	S	L	C	W	L	E	Q	P	N	H	H	L	I	P	A	D
Query Conservation								.	.
Alig confidence								.	.																																										.
Template Conservation																																																			.
Template Sequence		L	T	E	A	Q	R	I	D	W	X	R	L	I	R	A	E	N	V	G	P	R	T	F	R	S	L	I	N	H	F	G	S	A	R	A	A	L	E	R	L	P	E	L	A	R	R	G	G	A	.	A	R	A	G	R	I	P	S	E	D	E	A	R	R	E	I	E	A	G	R	R	I	G	V	E	L	V	A	P	G
Template Known Secondary structure		S													T	S	T	T														S	S																T		.	S	S																			T	T	T						T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		S	E	F	Y	P	P	Q	L	L	A	T	T	D	Y	P	G	A	L	F	V	E	G	E	L	H	A	L	H	.	.	.	S	F	Q	L	A	V	V	G	S	R	A	H	S	W	Y	G	E	R	W	G	R	L	F	C	E	T	L	A	T	R	G	V	T	I	T	S	G	L	A	R	G	I	D	G	V	A	H	K	A
Query Conservation																														.	.	.
Alig confidence																														.	.	.
Template Conservation
Template Sequence		E	T	G	Y	P	T	R	L	A	T	I	D	D	A	P	P	L	L	G	V	H	A	L	P	E	A	L	A	V	X	A	R	P	X	I	A	I	V	G	S	R	N	A	S	G	A	G	L	K	F	A	G	Q	L	A	A	D	L	G	A	A	G	F	V	V	I	S	G	L	A	R	G	I	D	Q	A	A	H	R	A
Template Known Secondary structure		S	T	T	S						T	S	T	T			S	S							T	T		G	G	G	G	G	S									S	S																				T									T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Q	V	N	G	V	S	I	A	V	L	G	N	G	L	N	T	I	H	P	R	R	H	A	R	L	A	A	S	L	L	E	Q	G	G	A	L	V	S	E	F	P	L	D	V	P	P	L	A	Y	N	F	P	R	R	N	R	I	I	S	G	L	S	K	G	V	L	V	V	E	A	A	L	R	S	G	S	L	V
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		S	L	S	.	.	S	G	T	V	A	V	L	A	G	G	H	D	K	I	Y	P	A	E	H	E	D	L	L	L	D	I	I	Q	T	R	G	A	A	I	S	E	X	P	L	G	H	V	P	R	G	K	D	F	P	R	R	N	R	L	I	S	G	A	S	V	G	V	A	V	I	E	A	A	Y	R	S	G	S	L	I
Template Known Secondary structure			T	T	.	.	T							S	S		T	T	S		S	S	G	G	G										T	T							S		T	T					T	T														S									T	T		T
Template Predicted Secondary structure					.	.
Template SS confidence
		174	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	R	C	A	L	E	Q	G	R	E	V	F	A	L	P	G	P	I	G	N	P	G	S	E	G	P	H	W	L	I	K	Q	G	A	I	L	V	T	E	P	E	E	I	L	E	N	L	Q	F	G	L	H	W	L	P	D	A	P	E	N	S	F	Y	S	P	D	Q	Q	D	V	A	L	P	F	P	E	L	L	A
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	R	R	A	A	D	Q	G	R	E	V	F	A	V	P	G	S	P	L	D	P	R	A	A	G	T	N	D	L	I	K	Q	G	A	T	L	I	T	S	A	S	D	I	V	E	A	V	A	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	G	E	P	D	T	G	D	R	T	R	I	L	A
Template Known Secondary structure										T										T	T		G	G	G									T	T					S	S									T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.															.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	G	D	E	V	T	P	V	D	V	V	A	E	R	A	G	Q	P	V	P	E	V	V	T	Q	L	L	E	L	E	L	A	G	W	I	A	A	V	P	G	G	Y	V	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	G	P	S	P	V	G	I	D	D	L	I	R	L	S	G	I	S	P	A	V	V	R	T	I	L	L	E	L	E	L	A	G	R	L	E	R	H	G	G	S	L	V	S	L
Template Known Secondary structure					S	S																												T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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