Job Description P30852 Confidence 98.27% Date Thu Jan 5 11:46:33 GMT 2012 Rank 14 Aligned Residues 157 % Identity 13% Template c2q4dB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 Resolution 2.15 Å

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		108	.	110	.	.	.	.		.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure									.				.																														.
Query SS confidence									.				.																														.
Query Sequence		F	Q	L	A	V	V	G	.	S	R	A	.	H	S	W	Y	G	E	R	W	G	R	L	F	C	E	T	L	A	T	R	G	V	T	I	T	S	G	L	A	R	.	G	I	D	G	V	A	H	K	A	A	L	Q	V	N	G	V	S	I	A	V	L	G	N	G	L	N	T	I	H	P	R	R	H	A	R	L	A	A
Query Conservation									.				.																														.
Alig confidence									.				.																														.																										.	.	.	.	.	.						.	.
Template Conservation																																																																					.	.	.	.	.	.						.	.
Template Sequence		R	K	I	C	V	F	C	G	S	H	S	G	H	R	E	V	F	S	D	A	A	I	E	L	G	N	E	L	V	K	R	K	I	D	L	V	Y	G	G	G	S	V	G	L	X	G	L	I	S	R	R	V	Y	E	G	G	L	H	V	L	G	I	I	P	K	A	L	.	.	.	.	.	.	X	P	I	E	I	.	.
Template Known Secondary structure		S								S				S	S																	T	T									S	S														S	S							B	G	G	G	.	.	.	.	.	.						.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.						.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.													.
Query SS confidence																																																											.	.	.	.	.	.													.
Query Sequence		S	L	L	E	Q	G	G	A	L	V	S	E	F	P	L	D	V	P	P	L	A	Y	N	F	P	R	R	N	R	I	I	S	G	L	S	K	G	V	L	V	V	E	A	A	L	R	S	G	S	L	V	T	A	R	C	A	L	.	.	.	.	.	.	E	Q	G	R	E	V	F	A	L	P	G	P	.	I	G	N	P
Query Conservation																																																											.	.	.	.	.	.													.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																.	.															.	.	.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	S	G	E	T	V	G	D	V	R	V	V	A	D	X	H	E	R	K	A	A	X	A	Q	E	A	E	A	F	I	A	L	.	.	P	G	G	Y	G	T	X	E	E	L	L	E	X	I	T	W	S	Q	L	G	I	H	K	K	T	V	G	L	L	N	V	D	G	Y	Y	N	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		S	S			S					B	S	S											T		S	B					.	.	S		S																	T	S										G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
												82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.										270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		G	S	E	G	P	H	W	L	I	K	Q	G	.	.	.	.	.	.	.	.	.	A	I	L	V	T	E	P	E	E	I	L	E	N	L	Q
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	A	L	F	D	T	G	V	E	E	G	F	I	K	P	G	A	R	N	I	V	V	S	A	P	T	A	K	E	L	X	E	K	X	E
Template Known Secondary structure													T	S	S		T	T	G	G	G	G					S	S
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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