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Job DescriptionP30852
Confidence69.06%DateThu Jan 5 11:46:33 GMT 2012
Rank260Aligned Residues79
% Identity11%Templatec1u5tB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex
Resolution3.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   275....280.........290.........300. ........310.........320. ........330.........340.
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Query Sequence  EPEEILENLQFGLHWLPDAPENSFYSP. . . . . DQQDVALPFPELLANVGDEV. . . . . . . . TPVDVVAERAGQPVPEVVTQ
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Template Sequence  SPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEV
Template Known Secondary structure 
TTTGGGT

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   456...460.........470.........480.........490.........500.........510.........520.........530.....
 
   342.......350...
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Query Sequence  LLELELAGWIAA
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Template Sequence  LQNCVDEGDLLI
Template Known Secondary structure  TS
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   536...540.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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