Job Description P77713 Confidence 100.00% Date Wed Jan 25 15:21:12 GMT 2012 Rank 24 Aligned Residues 348 % Identity 14% Template c3nqhA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase; PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution Resolution 2.11 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.																																																			.	.
Query SS confidence																			.	.	.	.																																																			.	.
Query Sequence		D	P	S	L	C	R	Q	G	E	D	Y	Y	I	A	T	S	T	.	.	.	.	F	E	W	F	P	G	V	R	I	Y	H	S	R	D	L	K	N	W	S	L	V	S	T	P	L	D	R	V	S	M	L	D	M	K	G	N	P	D	S	G	G	I	W	A	P	C	L	S	Y	A	.	.	D	G	K	F	W	L	L
Query Conservation																			.	.	.	.																																																			.	.
Alig confidence																			.	.	.	.																																								.	.	.									.	.
Template Conservation																																																														.	.	.
Template Sequence		G	A	C	I	V	E	E	N	G	R	Y	Y	L	F	G	E	Y	K	S	D	K	S	N	A	F	P	G	F	S	C	Y	S	S	D	D	L	V	N	W	K	F	E	R	V	V	L	P	X	Q	S	S	G	I	L	G	P	D	R	V	G	.	.	.	E	R	V	K	V	X	K	C	P	S	T	G	E	Y	V	X	Y
Template Known Secondary structure									T	T											S	S		S	S										S	S	S	S	S												S	S	S	T	T	S	T	T				.	.	.									T	T	T
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		Y	T	D	V	K	I	V	D	S	P	W	K	N	G	R	N	F	L	V	T	A	P	S	I	E	G	P	W	S	E	P	I	P	M	.	.	.	.	.	G	N	G	G	F	D	P	S	L	F	H	D	D	D	G	R	K	Y	Y	I	Y	R	P	W	G	P	R	H	H	S	N	P	H	N	T	I	V	L	Q	A	F
Query Conservation																																				.	.	.	.	.
Alig confidence																.	.	.																		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	H	A	D	D	X	N	Y	K	D	P	H	I	G	.	.	.	Y	A	T	C	S	T	I	A	G	E	Y	K	L	H	G	P	L	L	Y	E	G	K	P	I	R	R	W	D	X	G	T	Y	Q	D	T	D	G	T	G	Y	L	L	L	.	.	.	.	.	.	.	.	.	.	.	.	H	G	G	I	V	Y	R	L
Template Known Secondary structure							T	T	S		S					.	.	.					S	S	T	T	S											T	T							S							T	T	S							.	.	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.													.	180	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	Q	T	G	T	L	S	P	E	R	K	T	L	F	T	G	T	P	L	C	Y	T	E	G	A	H	L	Y	R	H	A	G	W	Y	Y	L	M	A	A	E	G	G	T	S	Y	E	H	A	V	V	V	L	R	S	K	N	I	D	G	P	Y	E	L	H	P	D	V	T	M	M	T	S	W	H	L	P	E	N	P
Query Conservation
Alig confidence																						.	.	.																																											.											.	.	.	.
Template Conservation																						.	.	.																																											.											.	.	.	.
Template Sequence		S	K	D	Y	R	T	A	E	E	K	V	V	S	G	V	G	G	S	H	G	.	.	.	E	S	P	A	X	F	K	K	D	G	T	Y	F	F	L	F	S	N	L	T	S	W	E	K	N	D	N	F	Y	F	T	A	P	S	V	K	G	P	W	T	R	Q	.	G	L	F	A	P	E	G	S	L	T	.	.	.	.
Template Known Secondary structure			T	T	S	S	S							S		S	T	T				.	.	.									T	T									S		T	T	S										S	S	T	T							.			S	S		T	T	S			.	.	.	.
Template Predicted Secondary structure																						.	.	.																																											.											.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																	.																																.
Query SS confidence																	.																																.
Query Sequence		L	Q	K	S	G	H	G	S	L	L	Q	T	H	T	G	.	E	W	Y	M	A	Y	L	T	S	R	P	L	R	L	P	G	V	P	L	L	A	S	G	G	R	G	Y	C	P	L	G	.	R	E	T	G	I	A	R	I	E	W	R	D	G	W	P	Y	V	E	G	G	K	H	A	Q	L	T	V	K	G	P	Q	V
Query Conservation																	.																																.
Alig confidence		.															.												.	.	.																		.																	.	.	.	.	.
Template Conservation		.																											.	.	.																																			.	.	.	.	.
Template Sequence		.	Y	N	S	Q	T	T	F	V	F	P	L	K	C	G	E	D	T	I	P	X	F	X	G	D	R	W	.	.	.	S	Y	P	H	Q	A	S	A	A	T	Y	V	W	X	P	X	Q	V	D	G	T	K	L	S	I	P	E	Y	W	P	S	W	D	V	.	.	.	.	.	D	K	L	K	P	V	N	P	L	R	K
Template Known Secondary structure		.														T	T												.	.	.		S	S																	T	T						S			S				T	.	.	.	.	.	T	T	T					G	G	G	G
Template Predicted Secondary structure		.																											.	.	.																																			.	.	.	.	.
Template SS confidence
			259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.						.	320	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.																							.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	Q	P	A	A	V	P	G	N	W	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	D	A	S	S	L	D	P	E	L	Q	T	L	R	I	P	F	D	D	T	L	G	S	L	T	A	R	P	G	F	L	R	L	Y	G	N	D	S	L	N	S	T	F	T
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																						.
Template Sequence		G	K	T	V	D	L	K	K	I	T	F	S	K	E	A	D	W	K	V	E	E	G	R	I	S	S	N	V	K	G	S	T	L	S	I	P	F	T	G	S	C	V	A	V	X	G	E	T	N	C	H	S	.	G	Y	A	R	X	N	I	L	D	K	K	G	E	K	I	Y	S	S	L	V	D	F	Y	S	K	A	N
Template Known Secondary structure		S					G	G	G	S			S	S	G	G	G	S				T	T							T	T									S	S									B	T	T	B	.										T	T												B		S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.				390	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		Q	S	T	V	A	R	R	W	Q	H	F	.	.	.	A	F	R	A	E	T	R	M
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		D	H	A	T	R	F	K	T	P	Q	L	A	E	G	E	Y	T	L	V	I	E	V
Template Known Secondary structure														S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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