Job Description P77713 Confidence 44.07% Date Wed Jan 25 15:21:12 GMT 2012 Rank 74 Aligned Residues 189 % Identity 11% Template c2vk7A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:exo-alpha-sialidase; PDBTitle: the structure of clostridium perfringens nani sialidase and2 its catalytic intermediates Resolution 1.2 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		75	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure								.																								.	.																			.	.	.	.	.														.
Query SS confidence								.																								.	.																			.	.	.	.	.														.
Query Sequence		P	C	L	S	Y	A	.	D	G	K	F	W	L	L	Y	T	D	V	K	I	V	D	S	P	W	K	N	G	R	N	.	.	F	L	V	T	A	P	S	I	E	G	P	W	S	E	P	I	P	M	.	.	.	.	.	G	N	G	G	F	D	P	S	L	F	H	D	D	.	D	G	R	K	Y	Y	I	Y	R	P	W
Query Conservation								.																								.	.																			.	.	.	.	.														.
Alig confidence								.																								.	.																			.	.	.	.	.														.
Template Conservation
Template Sequence		P	A	L	F	K	T	K	E	G	T	L	I	A	S	I	D	A	R	R	H	G	G	A	D	A	P	N	N	D	I	D	T	A	V	R	R	S	E	D	G	G	K	T	W	D	E	G	Q	I	I	M	D	Y	P	D	K	S	S	V	I	D	T	T	L	I	Q	D	D	E	T	G	R	I	F	L	L	V	T	H	F
Template Known Secondary structure								T	T	S										T	T	S	S			T	T	S	S										S	S	T	T	S	S											S	T	T												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1268	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.
		146	.	.	.	150																																																																								.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	R	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	P	H
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	K	Y	G	F	W	N	A	G	L	G	S	G	F	K	N	I	D	G	K	E	Y	L	C	L	Y	D	S	S	G	K	E	F	T	V	R	E	N	V	V	Y	D	K	D	S	N	K	T	E	Y	T	T	N	A	L	G	D	L	F	K	N	G	T	K	I	D	N	I	N	S	S	T	A	P	L	K	A	K	G
Template Known Secondary structure			T	T			T	T	T			S	S		S					T	T									T	T								T	T					T	T	S									T	T						T	T						T	T	S	S	S		S	S				S
Template Predicted Secondary structure
Template SS confidence
		1348	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																								.	.	.	.														.	.						.	.	.	.
Query SS confidence																								.	.	.	.														.	.						.	.	.	.
Query Sequence		N	T	I	V	L	Q	A	F	D	P	Q	T	G	T	L	S	P	E	R	K	T	L	.	.	.	.	F	T	G	T	P	L	C	Y	T	E	G	A	H	.	.	L	Y	R	H	A	.	.	.	.	G	W	Y	Y	L	M	A	A	E	G	G	T	S	Y	E	H	A	V	V	V	L	R	S	K	N	I	D	G	P	Y
Query Conservation																								.	.	.	.														.	.						.	.	.	.
Alig confidence																								.	.	.	.														.	.						.	.	.	.
Template Conservation
Template Sequence		T	S	Y	I	N	L	V	Y	S	D	D	D	G	K	T	W	S	E	P	Q	N	I	N	F	Q	V	K	K	D	W	M	K	F	L	G	I	A	P	G	R	G	I	Q	I	K	N	G	E	H	K	G	R	I	V	V	P	V	Y	Y	T	N	E	K	G	K	Q	S	S	A	V	I	Y	S	D	D	S	G	K	N	W
Template Known Secondary structure		S									S	S	T	T	S	S														T	T		S						S								S	S	T	T	T	T											T	T											S	S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1428	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.
		225	.	.	.	.									230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.
Query Sequence		E	L	H	P	D	.	.	.	.	.	.	.	.	V	T	M	M	T	S	W	H	L	P	E	N	P	L	Q	K	S	G	H	G	S	L	L	Q	T	H	T	G	E	W	Y	M	A	Y
Query Conservation							.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	G	E	S	P	N	D	N	R	K	L	E	N	G	K	I	I	N	S	K	T	L	S	D	D	A	P	Q	L	T	E	C	Q	V	V	E	M	P	N	G	Q	L	K	L	F	M
Template Known Secondary structure							T	T	T	T				T	T	S					T	T	T				S	T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		1508	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions