Job Description P77713 Confidence 66.76% Date Wed Jan 25 15:21:12 GMT 2012 Rank 65 Aligned Residues 231 % Identity 16% Template c2berA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:bacterial sialidase; PDBTitle: y370g active site mutant of the sialidase from2 micromonospora viridifaciens in complex with beta-neu5ac3 (sialic acid). Resolution 1.8 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																														.																																														.	.	.	.	.	.
Query SS confidence																														.																																														.	.	.	.	.	.
Query Sequence		S	T	P	L	D	R	V	S	M	L	D	M	K	G	N	P	D	S	G	G	I	W	A	P	C	L	S	Y	.	A	D	G	K	F	W	L	L	Y	T	D	V	K	I	V	D	S	P	W	K	N	G	R	N	F	L	V	T	A	P	S	I	E	G	P	W	S	E	P	I	P	M	G	N	G	.	.	.	.	.	.
Query Conservation																														.																																														.	.	.	.	.	.
Alig confidence																														.																																														.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	P	L	Y	T	E	Q	D	L	A	V	N	G	R	E	G	F	P	N	Y	R	I	P	A	L	T	V	T	P	D	G	D	L	L	A	S	Y	D	G	R	P	T	G	I	D	A	P	G	P	N	S	I	L	Q	R	R	S	T	D	G	G	R	T	W	G	E	Q	Q	V	V	S	A	G	Q	T	T	A	P	I
Template Known Secondary structure														T	T	B	T	T	B	S											T	T	S										T	T	S		S	T	T	S										S	S	T	T	S	S											B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
				125	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.										.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure		.	.												.																						.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query SS confidence		.	.												.																						.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query Sequence		.	.	G	F	D	P	S	L	F	H	D	D	D	.	G	R	K	Y	Y	I	Y	R	P	W	G	P	R	H	H	S	N	P	H	N	T	.	.	.	.	.	.	.	.	.	I	V	L	Q	A	F	D	P	Q	T	G	T	L	S	P	E	R	K	T	L	F	T	G	T	P	L	C	Y	T	E	.	.	.	.	.	.
Query Conservation		.	.												.																						.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Alig confidence		.	.												.																						.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	F	S	D	P	S	Y	L	V	D	R	E	T	G	T	I	F	N	F	H	V	Y	S	Q	R	Q	G	F	A	G	S	R	P	G	T	D	P	A	D	P	N	V	L	H	A	N	V	A	T	S	T	D	G	G	L	T	W	S	H	R	T	I	T	A	D	I	T	P	D	P	G	W	R	S	R	F	A	A	S
Template Known Secondary structure		B											T	T	T											S	S			T	T	T			S				T	T		T	T	S									S	S	T	T	S	S							T	G	G	G		S	S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		G	A	H	L	Y	R	H	A	G	W	Y	.	.	.	.	Y	L	M	A	A	E	G	G	T	S	Y	E	H	A	V	V	V	L	R	S	K	N	I	D	G	P	Y	E	L	H	P	D	V	T	M	M	T	S	W	H	L	P	E	N	P	L	Q	K	S	G	H	G	S	L	L	Q	T	H	T	G	E	W	Y	M	A
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	G	I	Q	L	R	Y	G	P	H	A	G	R	L	I	Q	Q	Y	T	I	I	N	A	A	G	A	F	Q	A	V	S	V	Y	S	D	D	H	G	R	T	W	R	A	G	E	A	V	G	.	.	.	.	.	.	.	.	.	.	.	.	V	G	M	D	E	N	K	T	V	E	L	S	D	G	R	V	L	L	N
Template Known Secondary structure									S	S	T	T	T	T											T	T	S										S	S	T	T	S	S							B		.	.	.	.	.	.	.	.	.	.	.	.	S	S			S							T	T	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.													.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	T	S	R	P	L	R	L	P	G	V	P	L	L	A	S	G	G	R	G	Y	C	P	L	G	R	E	T	G	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	D	S	A	R	S	G	Y	R	K	V	A	V	S	T	D	G	G	H	S	Y	G	P	V	T	I	D	R	D	L	P
Template Known Secondary structure					T	T			S								S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions