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Job DescriptionP77713
Confidence100.00%DateWed Jan 25 15:21:12 GMT 2012
Rank3Aligned Residues520
% Identity48%Templatec1yrzB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:xylan beta-1,4-xylosidase; PDBTitle: crystal structure of xylan beta-1,4-xylosidase from bacillus2 halodurans c-125
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  EITNPILTGFNPDPSLCRQGEDYYIATSTFEWFPGVRIYHSRDLKNWSLVSTPLDRVSMLDMKGNPDSGGIWAPCLSYAD
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Template Sequence  RIQNPILPGFHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDLKHWRFVSSPLTRTSQLDMKGNMNSGGIWAPCLSYHD
Template Known Secondary structure 
S
SB
SS

S
TT

BTSB
SSSSS

SB
STTT


TT

TT

S
T
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   2004.....2010.........2020.........2030.........2040.........2050.........2060.........2070.........2080...
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  GKFWLLYTDVKIVDSPWKNGRNFLVTAPSIEGPWSEPIPMGNGGFDPSLFHDDDGRKYYIYRPWGPRHHSNPHNTIVLQA
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Template Sequence  GTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNSSGFDPSLFHDDDGRKWLVNMIWDYRKGNHPFAGIILQE
Template Known Secondary structure  T
SSS

SSSSS







S
S


TTS



TTS
S
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   2084.....2090.........2100.........2110.........2120.........2130.........2140.........2150.........2160...
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  FDPQTGTLSPERKTLFTGTPLCYTEGAHLYRHAGWYYLMAAEGGTSYEHAVVVLRSKNIDGPYELHPDVTMMTSWHLPEN
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Template Sequence  YSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQPEL
Template Known Secondary structure  TTTT


TT


TTS
SSTT
SSTT



TT

S
TT
TT
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   2164.....2170.........2180.........2190.........2200.........2210.........2220.........2230.........2240...
 
   242.......250.........260.........270.........280.........290........ .300.........310.........320
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Query Sequence  PLQKSGHGSLLQTHTGEWYMAYLTSRPLRLPGVPLLASGGRGYCPLGRETGIARIEW. RDGWPYVEGGKHAQLTVKGPQV
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Template Sequence  ALQKAGHGSLVETQNGEWYLAHLCGRP. . . . . . . . . . . LKGKYCTLGRETAIQKVNWTEDGWLRIEDGGNHPLREVTAPD
Template Known Secondary structure  SS
TTS


...........BTTTB
TT


TTS
TTSSSS

S


S
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   2244.....2250.........2260.........2270 .........2280.........2290.........2300.........2310..
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  AEQPAAVPGNWRDDFDASSLDPELQTLRIPFDDTLGSLTARPGFLRLYGNDSLNSTFTQSTVARRWQHFAFRAETRMEFS
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Template Sequence  LPEHPFEKEPELDDFDAPQLHHQWNTLRIPADPSWCSLEERPGHLRLRGMESLTSVHSQSLVARRQQSFHCEVETKLEYQ
Template Known Secondary structure  S








S


SSS

TT
SS


TTTSSSSTTS
BS
TT
SS



SS

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   2313......2320.........2330.........2340.........2350.........2360.........2370.........2380.........2390..
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  PVHFQQSAGLTCYYNSKNWSYCFVDYEEGQGRTIKVIQLDHNVPSWPLHEQPIPVPEHAESVWLRVDVDTLVYRYSYSFD
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Template Sequence  PESFQHMAGLVIYYDTEDHVYLHVTWHEEKGKCLQIIQTKGGNYDELLASPIPL. . AEEKAVYLKGRIHRETMHLYFKQE
Template Known Secondary structure 

STTTTTTTTTSSSS

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TTS
TTT
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   2393......2400.........2410.........2420.........2430.........2440...... ...2450.........2460.........2470
 
   481 ........490.........500.........510.........520.........530.....
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Query Sequence  G. ETWHTVPVTYEAWKLSDDYIGGRGFFTGAFVGLHCEDISGDGCYADFDYFTYEP
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Template Sequence  GEAEWQPVGPTIDVTHMSDDSAKQ. VRFTGTFVGMATQDLSGTKKPADFDYFRYKE
Template Known Secondary structure  T
SS
GGGSSTTSSSS.





TTSS


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   2471........2480.........2490.... .....2500.........2510.........2520.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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