Job Description P27247 Confidence 100.00% Date Thu Jan 5 11:43:26 GMT 2012 Rank 5 Aligned Residues 279 % Identity 22% Template d1r5ja_ SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Phosphotransacetylase Resolution 2.70

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	T	L	A	L	D	V	M	G	G	D	F	G	P	S	V	T	V	P	A	A	L	Q	A	L	N	S	N	S	Q	L	T	L	L	L	V	G	N	S	D	A	I	T	P	L	L	A	K	A	D	F	E	Q	R	S	R	L	Q	I	I	P	A	Q	S	V	I	A	S	D	A	R	P	S	Q	A	I	R	A
Query Conservation
Alig confidence									.						.	.	.	.																																							.
Template Conservation									.						.	.	.	.																																							.
Template Sequence		K	N	X	K	I	V	F	.	P	E	G	N	D	.	.	.	.	E	R	V	V	R	A	A	A	R	L	K	F	E	G	L	L	E	P	I	I	L	G	Q	S	E	E	V	R	N	L	L	T	K	L	G	F	A	D	.	Q	D	Y	T	I	I	N	P	N	E	Y	A	D	F	D	K	X	K	E	A	F	V	E	V
Template Known Secondary structure		S							.	S		S	S		.	.	.	.												T	T	T	S						B	S												T	T				.	S	S				B		S	S	S		T	T
Template Predicted Secondary structure									.						.	.	.	.																																							.
Template SS confidence
		17	.	.	20	.	.	.		.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		82	.													.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																						.	.																																			.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.																						.	.																																			.
Query Sequence		S	R	.	.	.	.	.	.	.	.	.	.	.	.	G	S	S	M	R	V	A	L	E	L	V	K	E	G	R	A	Q	A	C	V	S	.	.	A	G	N	T	G	A	L	M	G	L	A	K	L	L	L	K	P	L	E	G	I	E	R	P	A	L	V	T	V	L	P	H	Q	Q	.	K	G	K	T	V	V	L	D
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.																						.	.																																			.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																						.	.																																			.
Template Conservation
Template Sequence		R	K	G	K	A	T	L	E	D	A	D	K	X	L	R	D	V	N	Y	F	G	V	X	L	V	K	X	G	L	A	D	G	X	V	S	G	A	I	H	S	T	A	D	T	V	R	P	A	L	Q	I	I	K	T	K	P	G	I	S	R	T	S	G	V	F	L	X	N	R	E	N	T	S	E	R	Y	V	F	A	D
Template Known Secondary structure			T	T	T										T	T	S											T	T	S		S						S	S	S		S										S	S		B		T	T		S	S										G	G	G	T						S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.																							.												.	.	.	.	.	.
Query SS confidence																																							.	.	.																							.												.	.	.	.	.	.
Query Sequence		L	G	A	N	V	D	C	D	S	T	M	L	V	Q	F	A	I	M	G	S	V	L	A	E	E	V	V	E	I	P	N	P	R	V	A	L	L	.	.	.	N	I	G	E	E	E	V	K	G	L	D	S	I	R	D	A	S	A	V	L	K	T	.	I	P	S	I	N	Y	I	G	Y	L	E	.	.	.	.	.	.
Query Conservation																																							.	.	.																							.												.	.	.	.	.	.
Alig confidence																											.					.							.	.	.																							.												.	.	.	.	.	.
Template Conservation																											.					.
Template Sequence		C	A	I	N	I	D	P	T	A	Q	E	L	A	E	I	A	V	N	T	A	E	T	A	K	I	.	F	D	I	D	.	P	K	I	A	X	L	S	F	S	T	K	G	S	G	K	A	P	Q	V	D	K	V	R	E	A	T	E	I	A	T	G	L	N	P	D	L	A	L	D	G	E	L	Q	F	D	A	A	F	V
Template Known Secondary structure		S	S	S		S	S																				.	T	T			.								S		S	T	T	S	S		S																		T	T	S
Template Predicted Secondary structure																											.					.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
										217	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.															.
Query SS confidence		.	.	.	.	.	.	.	.															.
Query Sequence		.	.	.	.	.	.	.	.	A	N	E	L	L	T	G	K	T	D	V	L	V	C	.	D	G	F	T	G	N	V	T	L	K	T	M	E	G	V	V	R	M	F	L	S	L	L	K	S	Q	G	E	G	K	K	R	S	W	W	L	L	L	L	K	R	W	L	Q	K	S	L	T	R	R	F	S	H	L	N	P	D
Query Conservation		.	.	.	.	.	.	.	.															.
Alig confidence		.	.	.	.	.	.	.	.															.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	T	A	A	I	K	A	P	D	S	A	V	A	G	Q	A	N	T	F	V	F	P	D	L	Q	S	G	N	I	G	Y	K	I	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	X	F
Template Known Secondary structure									S		S		S	S	T	T								S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																																								.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	N	G	A	C	L	L	G	L	R	G	T	V	I	K	S	H	G	A	A	N	Q	R	A	F	A	V	A	I	E	Q	A	V	Q	A	V	Q	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	I	G	P	I	L	Q	G	L	N	K	P	V	N	D	L	S	R	G	S	S	A	E	D	I	Y	K	L	A	I	I	T	A	A	Q	A	I	E	S
Template Known Secondary structure										S	B	S	S							T	T																			T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions