Job Description P27247 Confidence 100.00% Date Thu Jan 5 11:43:26 GMT 2012 Rank 10 Aligned Residues 282 % Identity 16% Template d1ptma_ SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like PdxA-like Resolution 1.96

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		M	T	R	L	T	L	A	L	D	V	M	G	G	D	F	G	.	.	.	P	S	V	T	V	P	A	A	L	Q	A	L	N	S	N	S	Q	L	T	L	L	L	V	G	N	S	D	A	I	T	P	L	L	A	K	A	D	F	E	Q	R	S	R	L	Q	I	I	P	A	Q	S	V	I	A	S	D	A	R	P	S	Q
Query Conservation																		.	.	.
Alig confidence												.	.					.	.	.							.	.	.	.																																.	.
Template Conservation												.	.														.	.	.	.																																.	.
Template Sequence		V	K	T	Q	R	V	V	I	T	P	.	.	G	E	P	A	G	I	G	P	D	L	V	V	Q	.	.	.	.	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	X	L	G	L	P	L	T	.	.	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L
Template Known Secondary structure												.	.		S	T	T	S	S								.	.	.	.		T	T	S			S	S																		T	T					.	.						T	T	S							T	T
Template Predicted Secondary structure												.	.														.	.	.	.																																.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		78	.	80	.	.	.	.	.																			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Query Sequence		A	I	R	A	S	R	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	M	R	V	A	L	E	L	V	K	E	G	R	A	Q	A	C	V	S	A	G	N	T	G	A	L	M	G	L	A	K	L	.	.	.	.	.	.	.	L	L	K	P	L	E	G	I	E	R	P	A	L	V	T
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	L	P	V	A	L	R	A	P	V	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	S	Q	A	K	K	V	V	X	X	L
Template Known Secondary structure									S	S			B	T	T	B			T	T																			T	S		S															T	T														T	T		S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		133	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.
Predicted Secondary structure									.	.	.	.																																															.	.	.	.									.	.	.
Query SS confidence									.	.	.	.																																															.	.	.	.									.	.	.
Query Sequence		V	L	P	H	Q	Q	K	.	.	.	.	G	K	T	V	V	L	D	L	G	A	N	V	D	C	D	S	T	M	L	V	Q	F	A	I	M	G	S	V	L	A	E	E	V	V	E	I	P	N	P	R	V	A	L	L	N	I	.	.	.	.	G	E	E	E	V	K	G	L	.	.	.	D	S	I	R	D	A	S	A
Query Conservation									.	.	.	.																																															.	.	.	.									.	.	.
Alig confidence									.	.	.	.													.	.																																	.	.	.	.									.	.	.
Template Conservation																									.	.
Template Sequence		A	T	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	D	I	A	D	A	I	.	.	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H	X	G	T	E	E	I	D	T	I	I	P	V	L	N
Template Known Secondary structure			S	S	S						S	S		S	S		G	G	G						.	.																			T	T			S	S								S	S	G	G	G	G	G	G	G	T	T		S					T
Template Predicted Secondary structure																									.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.												.
Query SS confidence																							.	.	.	.												.
Query Sequence		V	L	K	T	I	P	S	I	N	Y	I	G	Y	L	E	A	N	E	L	L	T	.	.	.	.	G	K	T	D	V	L	V	C	D	G	F	.	T	G	N	V	T	L	K	T	M	E	G	V	V	R	M	F	L	S	L	L	K	S	Q	G	E	G	K	K	R	S	W	W	L	L	L	L	K	R	W	L	Q	K	S
Query Conservation																							.	.	.	.												.
Alig confidence							.																.	.	.	.												.											.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																										.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	R	A	Q	.	G	X	K	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	D	N	A	D	A	V	L	A	X	Y	H	D	Q	G	L	P	V	L	K	Y	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	R	G	V	N	.	.	.	.	.	.	.	.	.	.	I	T	L	G
Template Known Secondary structure						T	.	T													S	S					T	T		S					S	S										T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure							.																																										.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.														.	.	280	.	.	.											.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	R	F	S	H	L	N	P	D	Q	Y	N	G	A	C	L	L	G	L	R	G	T	V	I	K	S	H	G	A	A	N	Q	R	A	F	A	V	A	I	E	Q	A	V	Q	A	V	Q	R
Query Conservation
Alig confidence											.	.	.					.	.						.	.	.	.	.
Template Conservation											.	.	.					.	.						.	.	.	.	.
Template Sequence		L	P	F	I	R	T	S	V	D	.	.	.	H	G	T	A	.	.	L	E	L	A	G	.	.	.	.	.	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K	X	I	V	N
Template Known Secondary structure		S	S	S						S	.	.	.	S				.	.	G	G	G	T	T	.	.	.	.	.	S	S
Template Predicted Secondary structure											.	.	.					.	.						.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.				.	.	.	300			.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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