Job Description P27247 Confidence 46.86% Date Thu Jan 5 11:43:26 GMT 2012 Rank 24 Aligned Residues 76 % Identity 14% Template c2ja9A_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40 Resolution 2.20 Å

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		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.																			.
Query SS confidence																																																	.																			.
Query Sequence		K	R	S	W	W	L	L	L	L	K	R	W	L	Q	K	S	L	T	R	R	F	S	H	L	N	P	D	Q	Y	N	G	A	C	L	L	G	L	R	G	T	V	I	K	S	H	G	A	.	A	N	Q	R	A	F	A	V	A	I	E	Q	A	V	Q	A	V	Q	.	R	Q	V	P	Q	R	I	A	A	R	L	E	S
Query Conservation																																																	.																			.
Alig confidence																														.	.	.	.	.															.																			.
Template Conservation																														.	.	.	.	.
Template Sequence		N	L	N	F	A	R	Q	L	L	F	N	N	D	F	P	L	L	K	V	L	A	A	H	T	K	F	E	V	.	.	.	.	.	A	I	G	L	N	G	K	I	W	V	K	C	E	E	L	S	N	T	L	A	C	Y	R	T	I	M	E	C	C	Q	K	N	D	T	A	A	F	K	D	I	A	K	R	Q	F	K	E
Template Known Secondary structure													T	T									T	T						.	.	.	.	.				T	T	T							S	S																				G	G	G									T	T	T
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		339	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		234	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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