Job Description P27247 Confidence 100.00% Date Thu Jan 5 11:43:26 GMT 2012 Rank 11 Aligned Residues 280 % Identity 20% Template c1yxoB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 1; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein pdxa2 pa0593 Resolution 2.01 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure															.	.	.																																																										.	.	.	.	.	.	.
Query SS confidence															.	.	.																																																										.	.	.	.	.	.	.
Query Sequence		L	T	L	A	L	D	V	M	G	G	D	F	G	.	.	.	P	S	V	T	V	P	A	A	L	Q	A	L	N	S	N	S	Q	L	T	L	L	L	V	G	N	S	D	A	I	T	P	L	L	A	K	A	D	F	E	Q	R	S	R	L	Q	I	I	P	A	Q	S	V	I	A	S	D	A	.	.	.	.	.	.	.
Query Conservation															.	.	.																																																										.	.	.	.	.	.	.
Alig confidence									.	.					.	.	.					.	.	.	.																																		.	.															.	.	.	.	.	.	.
Template Conservation									.	.												.	.	.	.																																		.	.
Template Sequence		L	R	F	A	L	T	P	.	.	G	E	P	A	G	I	G	P	D	L	C	.	.	.	.	L	L	L	A	R	S	A	Q	P	H	P	L	I	A	I	A	S	R	T	L	L	Q	E	R	A	G	Q	L	G	L	A	I	D	.	.	L	K	D	V	S	P	A	A	W	P	E	R	P	A	K	A	G	Q	L	Y	V
Template Known Secondary structure									.	.		S	T	T	S	S						.	.	.	.			G	G	G	S			S	S																			T					.	.					B	T	T	B				S				T	T
Template Predicted Secondary structure									.	.												.	.	.	.																																		.	.
Template SS confidence
		1003	.	.	.	.	.	.			1010	.	.	.	.	.	.	.	.	.	1020					.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.			.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.
														74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	R	P	S	Q	A	I	R	A	S	R	G	S	S	M	R	V	A	L	E	L	V	K	E	G	R	A	Q	A	C	V	S	A	G	N	T	G	A	L	M	G	L	A	K	L	.	.	.	.	.	.	.	L	L	K	P	L	E	G	I	E	R	P	A	L	V	T	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	D	T	P	L	A	A	P	V	R	P	G	Q	L	D	R	A	N	A	A	Y	V	L	E	T	L	T	R	A	G	Q	G	C	L	D	G	H	F	A	G	X	I	T	A	P	V	H	K	G	V	I	N	E	A	G	I	P	F	S	G	H	T	E	F	L	A	D	L	T	H	T	A	Q	V	V	X	X	L	A	T
Template Known Secondary structure							S	S			B	T	T	B			G	G	G																		T	S		S															T	T				S										T	T		S
Template Predicted Secondary structure
Template SS confidence
		1075	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.
		135	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure											.	.	.																																											.	.	.	.									.	.	.
Query SS confidence											.	.	.																																											.	.	.	.									.	.	.
Query Sequence		P	H	Q	Q	K	G	K	T	V	.	.	.	V	L	D	L	G	A	N	V	D	C	D	S	T	M	L	V	Q	F	A	I	M	G	S	V	L	A	E	E	V	V	E	I	P	N	P	R	V	A	L	L	N	I	.	.	.	.	G	E	E	E	V	K	G	L	.	.	.	D	S	I	R	D	A	S	A	V	L	K
Query Conservation											.	.	.																																											.	.	.	.									.	.	.
Alig confidence					.						.	.	.																																											.	.	.	.									.	.	.
Template Conservation					.
Template Sequence		R	G	L	.	R	V	A	L	A	T	T	H	L	P	L	R	E	V	A	D	A	I	S	D	E	R	L	T	R	V	A	R	I	L	H	A	D	L	R	D	K	F	G	I	A	H	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H	L	G	R	E	E	I	E	V	I	E	P	C	L	E	R	L	R
Template Known Secondary structure		T	T		.					S	S		S	S																												T	S			S	S								S	S	G	G	G	G	G	G	G	T	S		S					T
Template Predicted Secondary structure					.
Template SS confidence
		1155	.	.		.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.							.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		T	I	P	S	I	N	Y	I	G	Y	L	E	A	N	E	L	L	T	G	K	T	D	V	L	V	C	D	G	F	T	.	.	.	.	.	.	G	N	V	T	L	K	T	M	E	G	V	V	R	M	F	L	S	L	L	K	S	Q	G	E	G	K	K	R	S	W	W	L	L	L	L	K	R	W	L	Q	K	S	L	T
Query Conservation																																.	.	.	.	.	.
Alig confidence				.											.																	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation				.											.																																.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	.	G	L	D	L	I	G	P	L	P	A	.	D	T	L	F	T	P	K	H	L	E	H	C	D	A	V	L	A	X	Y	H	D	Q	G	L	P	V	L	K	Y	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	A	A	V	N	.	.	.	.	.	.	.	.	.	.	V	T	L	G	L	P
Template Known Secondary structure			T	.	T										.				S	S					T	T		S					S	S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					.	.	.	.	.	.	.	.	.	.				T	S	S
Template Predicted Secondary structure				.											.																																.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1234	.		.	.	.	.	1240	.	.	.	.	.		.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.														.	.	.	1280	.	.											.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	F	S	H	L	N	P	D	Q	Y	N	G	A	C	L	L	G	L	R	G	T	V	I	K	S	H	G	A	A	N	Q	R	A	F	A	V	A	I	E	Q	A	V	Q	A	V	Q	R	Q
Query Conservation
Alig confidence									.	.	.					.	.						.	.	.	.	.
Template Conservation									.	.	.					.	.						.	.	.	.	.
Template Sequence		I	I	R	T	S	V	D	.	.	.	H	G	T	A	.	.	L	D	L	A	G	.	.	.	.	.	S	G	R	I	D	S	G	S	L	Q	V	A	L	E	T	A	Y	Q	X	A	A	S	R
Template Known Secondary structure		S						S	.	.	.	S				.	.	G	G	G	T	T	.	.	.	.	.	S
Template Predicted Secondary structure									.	.	.					.	.						.	.	.	.	.
Template SS confidence
		1289	1290	.	.	.	.	.				.	.	.	.			1300	.	.	.	.						.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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