Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8R4
Confidence87.15%DateWed Jan 25 15:20:19 GMT 2012
Rank7Aligned Residues43
% Identity21%Templatec2ykqC_
PDB info PDB header:rna-binding proteinChain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50...
Predicted Secondary structure 
Query SS confidence 










































Query Sequence  AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK
Query Conservation    

  




 


 

  
  

  
  
  

  
  

 
Alig confidence 










































Template Conservation 



 


  
  
  
      
    
 

 

 


 


Template Sequence  DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK
Template Known Secondary structure  TTT
Template Predicted Secondary structure 

Template SS confidence 










































   112.......120.........130.........140.........150....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions