|   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | P | S | S | F | Q | C | N | L | K | C | D | Y | C | F | Y | L | E | K | E | S | Q | F | T | H | E | K | W | M | D | D | S | T | L | K | E | F | I | K | Q | Y | I | A | A | S | G | N | Q | V | Y | F | T | W | Q | G | G | E | P | T | L | A | G | L | D | F | F | R | K | V | I | H | Y | Q | Q | R | Y | A | G | Q |
Query Conservation |   |
  |   |
|
|
|   |   |
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |
|   |   |
|
|   |
|   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   | . |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   | . | . |   |
|   |
|   |
|
|   |   |   |   |   |   |   |
|   |
|   |   |
|
|   |   |   |
|   |   | . | . | . |
Template Sequence |   |
I | I | E | F | S | N | V | C | R | K | N | C | L | Y | C | G | L | R | R | D | N | K | N | L | K | R | Y | . |
R | M | T | P | E | E | I | V | E | R | A | R | L | A | V | Q | F | G | A | K | . |
. |
T | I | V | L | Q | S | G | E | D | P | Y | Y | M | P | D | V | I | S | D | I | V | K | E | I | K | K | M | . |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |
|
|
| S |
|
|
| T | T |
| T | T |
| T | T |
|
| S | S |
|
|
| . | B |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | . | . |  |  |  |  |  |  | S |
|
| G | G | G | T | T |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | |
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | |
|
|
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | |
|
. |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
| . | . |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
Query Sequence |   |
K | R | I | F | N | A | L | Q | T | N | G | I | L | L | N | N | E | W | C | A | F | L | K | E | H | E | F | L | V | G | I | S | I | D | G | P | Q | E | L | H | D | R | Y | R | R | S | N | S | G | N | G | T | F | A | K | V | I | A | A | I | E | R | L | K | S | Y | Q | V | E | F | N | T | L | T | V | I | N | . |
. |
N |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |
|   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   | . | . |   |
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
Template Conservation |   |
. | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|
|   |   |   |   | . | . |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   | . |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|
|
|
Template Sequence |   |
. |
. |
. |
G | V | A | V | T | L | S | L | G | E | W | P | R | E | Y | Y | E | K | W | K | E | A | G | A | D | R | Y | . |
. |
L | L | R | H | E | T | A | N | P | V | L | H | R | K | L | R | P | D | T | S | F | E | N | R | L | N | L | L | T | . |
L | K | E | L | G | Y | E | T | G | A | G | S | M | V | G | L | P | G |
Template Known Secondary structure |   |
. | . | . | S |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | T | T |
|
|  |  | . | . |  |
|
|
| B |
| S |
|  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |
|
|  |  | . |  |  |  | T | T |
|  |  |  |  |
| B |  |  | S |
| T | T |
Template Predicted Secondary structure |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . | . |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | |
|
. | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | |
. | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
  |
  |   |
163 | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | N | V | H | Y | P | L | E | V | Y | H | F | L | K | S | I | G | S | K | H | M | Q | F | I | E | L | L | E | T | G | T | P | N | I | D | F | S | G | H | S | E | N | T | F | R | I | I | D | F | S | V |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |
|   |
|   |   |
|   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |
Template Sequence |   |
Q | T | I | D | D | L | V | D | D | L | L | F | L | K | E | H | D | F | D | M | V | G | I | G | P | F | I | P | H | P | D | T | P | L | A | N | E | K | K | G | D | F | T | L | T | L | K | M | V | A | L |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |
|
|  |  |
|
|
|
| T | T | S | T | T | T | T | S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
205 | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . |
  |