 |
Job Description | P76134 | Confidence | 54.32% | Date | Thu Jan 5 12:19:23 GMT 2012 |
Rank | 33 | Aligned Residues | 81 |
% Identity | 11% | Template | c2zq0B_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:alpha-glucosidase (alpha-glucosidase susb); |
PDBTitle: crystal structure of susb complexed with acarbose
|
Resolution | 1.60 Å |
|
 |
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 60 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | H | E | K | W | M | D | D | S | T | L | K | E | F | I | K | Q | Y | I | A | A | S | G | N | Q | V | Y | F | T | . |
. |
. |
. |
. |
. |
. |
. |
W | Q | G | G | E | P | . |
. |
. |
. |
. |
. |
. |
T | L | A | G | L | D | F | F | R | K | V | I | H | Y | Q | Q | R | Y | A | G | Q | K | R | I | F | N | A | L | Q | T |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . | . |   |   |
|
|
|
| . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   |   |   |
|   |
|
|
|
|
|
|   |   |
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
|   |
|
|
|   |
|
|
|   |
|
|
|   |
|   |
|
|   |   |   |   |   |
Template Sequence |   |
N | G | K | H | S | A | N | T | A | N | V | K | R | Y | I | D | F | A | A | A | H | G | F | D | A | V | L | V | E | G | W | N | E | G | W | E | D | W | F | G | N | S | K | D | Y | V | F | D | F | V | T | P | Y | P | D | F | D | V | K | E | I | H | R | Y | A | A | R | K | G | I | K | M | M | M | H | H | E | T | S | A |
Template Known Secondary structure |   |
| S |
| B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
| S |
| B | T | T | G | G | G |
| S | S | S |
|
| S | S |
|
|
| S | S |
| B |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |
| T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
363 | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . |
  |
  |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | I | L | L | N | N | E | W | C | A | F | L | K | E | H |
Query Conservation |   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
Template Sequence |   |
S | V | R | N | Y | E | R | H | M | D | K | A | Y | Q | F | M |
Template Known Secondary structure |   |
B |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
443 | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|