Phyre 2 alignment of P0AFV2 with c2djwF

Job Description P0AFV2
Confidence 54.09% Date Thu Jan 5 11:27:21 GMT 2012

Rank 26 Aligned Residues 67

% Identity 9% Template c2djwF_

PDB info PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence	N	Y	H	L	Q	L	T	L	V	N	G	N	T	V	S	M	L	D	W	F	K	Q	Q	K	I	K	T	D	L	V	S	L	Q	E	N	E	D	H	E	V	V	A	I	D	I	Q	L	H	A	T	T	S	I	E	D	L	L	R	L	.	L	K	G	M	A	G	V	K	G	V	S
Query Conservation																																																												.
Alig confidence																																						.	.	.																				.
Template Conservation																																						.	.	.
Template Sequence	T	A	F	V	L	I	R	P	R	G	N	R	V	Q	A	L	G	E	A	I	A	E	L	P	Q	V	A	E	V	Y	S	V	T	G	P	Y	D	.	.	.	L	V	A	L	V	R	L	K	D	V	E	E	L	D	D	V	V	T	Q	G	I	L	S	L	E	G	V	E	R	T	E
Template Known Secondary structure										G	G	G									T	T	S	T	T								S	S	S	S	S	.	.	.								S	S	S	T	T										T	T	S	T	T
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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