Job Description P0A7C2 Confidence 99.93% Date Thu Jan 5 11:05:19 GMT 2012 Rank 4 Aligned Residues 190 % Identity 24% Template c3bdnB_ PDB info PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor Resolution 3.91 Å

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		2	.	.	.	.	.	.	.	10					.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.												.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	L	T	A	R	Q	Q	E	.	.	.	.	V	F	D	L	I	R	D	H	I	S	Q	T	G	M	P	P	T	R	A	E	I	A	Q	R	L	G	F	R	S	P	N	A	A	E	E	H	.	.	.	.	.	.	.	.	.	.	.	L	K	A	L	A	R	K	G	V	I	E	I	V	S	G	A	S	R	G	I
Query Conservation											.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.															.	.												.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.												.
Template Sequence		K	P	L	T	Q	E	Q	L	E	D	A	R	R	L	K	A	I	Y	E	K	K	K	N	E	L	G	L	.	.	S	Q	E	S	V	A	D	K	M	G	M	.	G	Q	S	G	V	G	A	L	F	N	G	I	N	A	L	N	A	Y	N	A	A	L	L	A	K	I	L	K	V	S	V	E	E	F	S	P	S	I	A
Template Known Secondary structure																													.	.								T	T	T	S	.		S	S	S	T						T	S	S														T	T	S		S	T	T	T
Template Predicted Secondary structure																													.	.												.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		67	.	.	70	.													.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																						.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																						.	.	.	.	.	.
Query Sequence		R	L	L	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	E	E	E	G	L	P	L	V	G	R	V	A	A	G	E	P	L	L	A	Q	Q	H	I	E	G	H	Y	Q	.	.	.	V	D	P	S	L	F	K	P	N	A	D	F	L	L	R	V	S	G	M	S	M	.	.	.	.	.	.	K	D	I	G	I
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																						.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																						.	.	.	.	.	.				.
Template Conservation																																																																																.
Template Sequence		R	E	I	Y	E	M	Y	E	A	V	S	M	Q	P	S	L	R	S	E	Y	E	Y	P	V	F	S	H	V	Q	A	G	M	F	S	P	E	L	R	T	F	T	K	G	D	A	E	R	W	V	S	T	T	K	K	A	S	D	S	A	F	W	L	E	V	E	G	N	S	M	T	A	P	T	G	S	K	P	S	.	F
Template Known Secondary structure										T	S	S							S								S	S	S			S		S	S	S				T	T		S									S	S					T	T								S		S	S			S	S	S	S	S			.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		M	D	G	D	L	L	A	V	H	K	T	Q	D	V	R	N	G	Q	V	V	V	A	R	I	D	D	E	.	V	T	V	K	R	L	K	K	Q	G	N	K	V	E	L	L	P	E	N	S	E	F	K	P	I	V	V	D	L	R	Q	Q	S	F	T	I	E	G	L	A	V	G	V	I	R	N	G	D
Query Conservation																													.
Alig confidence																													.																											.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		P	D	G	M	L	I	L	V	D	P	E	Q	A	V	E	P	G	D	F	C	I	A	R	L	G	G	D	E	F	T	F	K	K	L	I	R	G	S	G	Q	V	F	L	Q	P	L	N	P	Q	Y	P	M	I	P	.	.	.	.	.	E	S	C	S	V	V	G	K	V	I	A	S	Q	W	P	E	E
Template Known Secondary structure			T	T							S	S					T	T								T	T	T										S	S	S	S						S		S	S	S			B		.	.	.	.	.																S	T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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