 |
Job Description | P0A7C2 | Confidence | 93.44% | Date | Thu Jan 5 11:05:19 GMT 2012 |
Rank | 169 | Aligned Residues | 49 |
% Identity | 24% | Template | c2rnjA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:response regulator protein vrar; |
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
|
Resolution | UNK |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | L | T | A | R | Q | Q | E | V | F | D | L | I | R | D | H | I | S | Q | T | G | M | P | P | T | R | A | E | I | A | Q | R | L | G | F | R | S | P | N | A | A | E | E | H | L | K | A | L | A | R | K | G | V | I | E | I |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   | . | . | . | . | . |
|   | . | . |   |   |   |
|
|
|   |   |
|   |
| . |
|   |   |
|
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|
Template Sequence |   |
E | M | L | T | E | R | E | M | E | I | L | L | L | I | A | K | . |
. |
. |
. |
. |
G | Y | . |
. |
S | N | Q | E | I | A | S | A | S | H | I | . |
T | I | K | T | V | K | T | H | V | S | N | I | L | S | K | L | E | V | Q | D |
Template Known Secondary structure |   |
G | G |
|
| S |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | . | T |
| . | . |
| T | T |  |  |  |  |  |  | T |
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
| . | . |
|  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | |
|
|
|
|
. | . | |
|
. | . | . | . | . | . | 170 | . | . | . | . | |
. | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|