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Job DescriptionP0A7C2
Confidence99.85%DateThu Jan 5 11:05:19 GMT 2012
Rank7Aligned Residues170
% Identity13%Templatec2fjrB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40...... ...50.........60.........70.........80..
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Query Sequence  DLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH. . . . . . . . . . LKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRV
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Template Sequence  DVLDRICEAYGFS. QKIQLANHFDI. ASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGE. GEAFVNNRESSDAKRI
Template Known Secondary structure  T
S.
TTTTT
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S.S
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TTTTSSS

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   12.......20.... .....30..... ....40.........50.........60.........70.. .......80........
 
   83......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  AAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQ.
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Template Sequence  EGFTLSEEILKSDKQLSVDAQFFT. . . . . . . . . KPLTDGMAIRSEGKIYFVDKQASLSDG. LWLVDIKGAISIRELTKLP
Template Known Secondary structure  TT

GGG
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TTTTTT

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   8990.........100.........110.. .......120.........130......... 140.........150........
 
   162.......170.........180.........190.........200
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Query Sequence  GNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGD
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Template Sequence  GRKLHVAGGKVPF. . . . . ECGIDDIKTLGRVVGVYSEVN
Template Known Secondary structure  TTSSSS
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   159160.........170. ........180.........190..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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