|   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
Query Sequence |   |
A | R | Q | Q | E | V | F | D | L | I | R | D | H | I | S | Q | T | G | M | P | P | T | R | A | E | I | A | Q | R | L | G | F | R | S | P | N | A | A | E | E | H | L | K | A | L | A | R | K | G | V | I | E | I | V | S | G | A | S | R | G | I | R | L | L | Q | E | E | E | E | . |
. |
. |
. |
. |
. |
. |
G | L | P | L |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |
|
| . | . |
|
|   |
|
|
|   |   |   |
|
| . |
|   |   |   |
|
|   |
|
|   |
|   |   |   |   |
|
|
|   |   |
|   |   |
|
|   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | A | S | T | G | F | A | E | L | L | K | D | R | R | E | Q | V | K | M | . |
. |
D | H | A | A | L | A | S | L | L | G | E | . |
T | P | E | T | V | A | A | W | E | N | G | E | G | G | E | L | T | L | T | Q | L | G | R | I | A | H | V | L | G | T | S | I | G | A | L | T | P | P | A | G | N | D | L | D | D | G | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . | . |
|  |  |  |  |  |  |  |  | T |
| . |
|  |  |  |  |  |  |  |  | T | T | T |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T | S |
| T | G | G | G | S |
|
|
|
|
|
|
| B | T | T | B |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | |
|
. | . | . | . | . | 30 | . | . | . | . | . | |
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
|
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . |
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | G | R | V | A | A | G | E | P | L | L | A | Q | Q | H | I | E | G | H | Y | Q | . |
V | D | P | S | L | F | K | P | N | A | D | F | L | L | R | V | S | G | M | S | . |
. |
. |
M | K | D | I | G | I | M | D | G | D | L | L | A | V | H | K | T | Q | D | V | R | N | G | Q | V | V | V | A | R | I | D | D | E | V | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   | . |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|
|
| . | . | . |
|   |
|   |   |
|   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   | . | . | . | . | . |
|
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
I | I | Q | M | P | D | E | R | P | I | L | K | N | V | D | Y | Y | V | Y | N | C | L | V | R | T | K | R | A | P | S | L | V | P | L | V | V | D | V | L | T | D | N | P | D | D | A | K | F | N | S | G | H | A | G | N | E | F | L | F | . |
. |
. |
. |
. |
V | L | E | G | E | I | H | M | K | W | G | D | K | E | N | P |
Template Known Secondary structure |   |
|
|
|
| G | G | G |
|
|  |  |
|
|
| T | T |  |  |  |  |  |
|
|
|
| T | T | S | T | T |
|  |  |  |  |  |  |  |
|
|
|
| G | G | G |
|
|
|
|
|
|
| S | S |
|  |  |  |  | . | . | . | . | . |  |  |  | S |
|  |  |  |  |  | S |
| T | T | S |
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  | . | . | . | . | . |  |  |
|
|  |  |  |  |  |  |
|
|  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
  |
  |   |
155 | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | K | R | L | K | K | Q | G | N | K | V | E | L | L | P | E | N | S | E | F | K | P | I | V | V | D | L | R | Q | Q | S | F | T | I | E | G | L |
Query Conservation |   |
|
|
|
|   |   |   |   |   |   |
|   |
|   |
|   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |
| . | . |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
Template Sequence |   |
K | E | A | L | L | P | T | G | A | S | M | F | V | E | E | H | V | P | . |
. |
H | A | F | T | A | A | K | G | T | G | S | A | K | L | I | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T |
|  |  |  |  |
| T | T |
|
| . | . |  |  |  |  |  | S | T | T | S |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | |
|
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . |
  |