Return to main results Retrieve Phyre Job Id

Job DescriptionP60869
Confidence99.52%DateThu Jan 5 12:07:13 GMT 2012
Rank1Aligned Residues79
% Identity23%Templated1vcta2
SCOP infoTrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like
Resolution1.85

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   299300.........310.........320..... ....330.........340.. .......350.........360.........370......
Predicted Secondary structure 
















.






.












Query SS confidence 


























.
















.

































Query Sequence  DMRIVTEEVVVKNHNAVGKRLAQLKLT. DHGCFLNRVIRSQIEMP. IDDNVVLNKGDVLQVSGDARRVKTIADRIGFISI
Query Conservation        
 

   
 
 



 

  
.  

 
  
 
 
    .      
  

 


 
    
       
    
Alig confidence 


























.
















.

































Template Conservation      
 
  
   
 
 



 

 
       

 
 
 
  
  
     
  

 
 
 
    
  
  
 
   
Template Sequence  GEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIR
Template Known Secondary structure  SSS

TT
TTTT
B
S
TTS

TT
B

TT

TS

Template Predicted Secondary structure 



































Template SS confidence 















































































   119120.........130.........140.........150.........160.........170.........180.........190........
 
   377
Predicted Secondary structure 
Query SS confidence 
Query Sequence  H
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  V
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   199
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions