Job Description P60869 Confidence 39.48% Date Thu Jan 5 12:07:13 GMT 2012 Rank 28 Aligned Residues 137 % Identity 18% Template c2qt5A_ PDB info PDB header:peptide binding protein Chain: A: PDB Molecule:glutamate receptor-interacting protein 1; PDBTitle: crystal structure of grip1 pdz12 in complex with the fras12 peptide Resolution 2.30 Å

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		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.								.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.
Query Sequence		I	R	A	Y	R	V	G	P	E	L	V	A	W	T	D	G	K	N	L	R	E	L	G	I	Y	R	Q	T	G	C	Y	I	E	R	I	R	R	N	G	I	L	A	N	P	D	G	D	A	V	L	Q	M	G	D	E	I	A	L	V	G	.	.	.	.	.	.	.	Y	P	D	A	H	A	R	L	D	P	S	F	R
Query Conservation																																																														.	.	.	.	.	.	.
Alig confidence																.							.																			.	.	.																		.	.	.	.	.	.	.
Template Conservation																.							.																			.	.	.
Template Sequence		S	T	V	V	E	L	M	K	K	E	G	T	T	L	.	G	L	T	V	S	G	.	G	I	D	K	D	G	K	P	R	V	S	N	L	R	Q	G	G	I	.	.	.	A	A	R	S	D	Q	L	D	V	G	D	Y	I	K	A	V	N	G	I	N	L	A	K	F	R	H	D	E	I	I	S	L	L	K	N	V	G
Template Known Secondary structure											T	T				.							.		T	T	S	S	S		S							T	T	S		.	.	.				T	T	S			T	T							T	T				T	T	S											T
Template Predicted Secondary structure																.							.																			.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		288	.										290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																					.
Query SS confidence				.	.	.	.	.	.	.	.	.																																					.
Query Sequence		N	G	.	.	.	.	.	.	.	.	.	K	E	V	F	D	R	D	L	L	D	M	R	I	V	T	E	E	V	V	V	K	N	H	N	A	V	G	K	R	L	A	Q	L	K	L	T	.	D	H	G	C	F	L	N	R	V	I	R	S	Q	I	E	M	P	I	D	D	N	V	V	L	N	K	G	D	V	L	Q
Query Conservation				.	.	.	.	.	.	.	.	.																																					.
Alig confidence				.	.	.	.	.	.	.	.	.																																					.
Template Conservation
Template Sequence		E	R	V	V	L	E	V	E	Y	E	L	P	P	V	S	I	Q	G	S	S	V	M	F	R	T	V	E	V	T	L	H	K	E	G	N	T	F	G	F	V	I	R	G	G	A	H	D	D	R	N	K	S	R	P	V	V	I	T	C	V	R	P	G	G	P	A	D	R	E	G	T	I	K	P	G	D	R	L	L
Template Known Secondary structure		S																		S	S													B	T	T	B		S									S	S	T	T	T											T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions