Job Description P60869 Confidence 44.76% Date Thu Jan 5 12:07:13 GMT 2012 Rank 24 Aligned Residues 96 % Identity 17% Template c2d8iA_ PDB info PDB header:immune system, signaling protein Chain: A: PDB Molecule:t-cell lymphoma invasion and metastasis 1 PDBTitle: solution structure of the pdz domain of t-cell lymphoma2 invasion and metastasis 1 varian Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																														.																																															.	.	.	.	.
Query SS confidence																														.																																															.	.	.	.	.
Query Sequence		G	L	D	T	D	A	N	R	K	V	Y	L	P	V	I	R	A	Y	R	V	G	P	E	L	V	A	W	T	.	D	G	K	N	L	R	E	L	G	I	Y	R	Q	T	G	C	Y	I	E	R	I	R	R	N	G	I	L	A	N	P	D	G	D	A	V	L	Q	M	G	D	E	I	A	L	V	G	.	.	.	.	.
Query Conservation																														.																																															.	.	.	.	.
Alig confidence																														.																																.	.	.	.												.	.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		S	S	G	S	S	G	E	I	E	I	C	P	K	V	T	Q	S	I	H	I	E	K	S	D	T	A	A	D	T	Y	G	F	S	L	S	S	V	E	E	D	G	I	R	R	L	Y	V	N	S	V	K	E	T	G	L	A	S	K	K	G	.	.	.	.	L	K	A	G	D	E	I	L	E	I	N	N	R	A	A	D
Template Known Secondary structure			S	S							S	S												S		T	T	T													T	T											T	T	S	S					T	.	.	.	.			T	T							S	S		B	G	G
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
				275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Y	P	D	A	H	A	R	L	D	P	S	F	R	N	G	K	E	V	F	D	R	D	L	L	D	M
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		A	L	N	S	S	M	L	K	D	F	L	S	Q	P	S	L	G	L	L	V	R	T	Y	P	E	L	E	E
Template Known Secondary structure		G											T	S	S												S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions