Job Description P60869 Confidence 77.67% Date Thu Jan 5 12:07:13 GMT 2012 Rank 12 Aligned Residues 129 % Identity 15% Template c1u3bA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains Resolution UNK

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.								.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																											.																																					.	.	.	.	.	.	.
Query SS confidence																											.																																					.	.	.	.	.	.	.
Query Sequence		V	I	R	A	Y	R	V	G	P	E	L	V	A	W	T	D	G	K	N	L	R	E	L	G	I	.	Y	R	Q	T	G	C	Y	I	E	R	I	R	R	N	G	I	L	A	N	P	D	G	D	A	V	L	Q	M	G	D	E	I	A	L	V	G	.	.	.	.	.	.	.	Y	P	D	A	H	A	R	L	D	P	S
Query Conservation																											.																																					.	.	.	.	.	.	.
Alig confidence																	.										.																	.	.	.																		.	.	.	.	.	.	.
Template Conservation																	.																											.	.	.
Template Sequence		E	F	K	D	V	F	I	E	K	Q	K	G	E	I	L	.	G	V	V	I	V	E	S	G	W	G	S	I	L	P	T	V	I	I	A	N	M	M	H	G	G	P	.	.	.	A	E	K	S	G	K	L	N	I	G	D	Q	I	M	S	I	N	G	T	S	L	V	G	L	P	L	S	T	C	Q	S	I	I	K	G
Template Known Secondary structure												T	T				.									S	S		S	S		S								S	S	S		.	.	.					S	S			T	T							T	T				T	T	S
Template Predicted Secondary structure																	.																											.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	N	G	K	E	V	F	D	R	D	L	L	D	M	R	I	V	T	E	E	V	V	V	K	N	H	N	A	V	G	K	R	L	A	Q	L	K	L	T	D	H	G	C	F	L	N	R	V	I	R	S	Q	I	E	M	P	I	D	D	N	V	V	L	N	K	G	D	V	L	Q
Query Conservation
Alig confidence																															.	.	.	.	.	.																									.	.	.	.
Template Conservation																															.	.	.	.	.	.																									.	.	.	.
Template Sequence		L	K	N	Q	S	R	V	K	L	N	I	V	R	C	P	P	V	T	T	V	L	I	R	R	P	D	L	R	Y	.	.	.	.	.	.	Q	L	G	F	S	V	Q	N	G	I	I	C	S	L	M	R	G	G	I	A	E	R	G	G	.	.	.	.	V	R	V	G	H	R	I	I
Template Known Secondary structure		T	T	S		S																				S	S	T	T		.	.	.	.	.	.			S					T	T							T	T	S						T	.	.	.	.			T	T
Template Predicted Secondary structure																															.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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