Job Description P60869 Confidence 56.05% Date Thu Jan 5 12:07:13 GMT 2012 Rank 20 Aligned Residues 136 % Identity 15% Template c1p1dA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:glutamate receptor interacting protein; PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins Resolution UNK

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.								.	.	.	.	.	280	.	.	.
Predicted Secondary structure																							.	.	.																																									.	.	.	.	.	.	.
Query SS confidence																							.	.	.																																									.	.	.	.	.	.	.
Query Sequence		V	I	R	A	Y	R	V	G	P	E	L	V	A	W	T	D	G	K	N	L	R	.	.	.	E	L	G	I	Y	R	Q	T	G	C	Y	I	E	R	I	R	R	N	G	I	L	A	N	P	D	G	D	A	V	L	Q	M	G	D	E	I	A	L	V	G	.	.	.	.	.	.	.	Y	P	D	A	H	A	R	L	D
Query Conservation																							.	.	.																																									.	.	.	.	.	.	.
Alig confidence																.							.	.	.																				.	.	.																			.	.	.	.	.	.	.
Template Conservation																.																													.	.	.
Template Sequence		E	T	T	E	V	V	L	T	A	D	P	V	T	G	.	F	G	I	Q	L	Q	G	S	V	F	A	T	E	T	L	S	S	P	P	L	I	S	Y	I	E	A	D	S	.	.	.	P	A	E	R	C	G	V	L	Q	I	G	D	R	V	M	A	I	N	G	I	P	T	E	D	S	T	F	E	E	A	N	Q	L	L
Template Known Secondary structure											B	T	T	T	B	.									S	S		S	S	S		S		S								T	T	S	.	.	.					T	S				S	S							T	T	B		S	T	T	S
Template Predicted Secondary structure																.																													.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.									.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.																																			.	.
Query SS confidence										.	.	.	.	.	.	.	.																																			.	.
Query Sequence		P	S	F	R	N	G	K	E	.	.	.	.	.	.	.	.	V	F	D	R	D	L	L	D	M	R	I	V	T	E	E	V	V	V	K	N	H	N	A	V	G	K	R	L	A	Q	L	K	L	T	.	.	D	H	G	C	F	L	N	R	V	I	R	S	Q	I	E	M	P	I	D	D	N	V	V	L	N	K	G	D
Query Conservation										.	.	.	.	.	.	.	.																																			.	.
Alig confidence										.	.	.	.	.	.	.	.																																			.	.															.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		R	D	S	S	I	T	S	K	V	T	L	E	I	E	F	D	V	A	E	S	V	I	P	S	S	G	T	F	H	V	K	L	P	K	K	H	S	V	E	L	G	I	T	I	S	S	P	S	S	R	K	P	G	D	P	L	V	I	S	D	I	K	K	G	S	V	.	.	.	A	H	R	T	G	T	L	E	L	G	D
Template Known Secondary structure			T			S	S	S										S		S			B			S	S										S	S										S		S	S	S	T	T										S	S	S		.	.	.				T	S				T	T
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.
		354	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		176	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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