Job Description P52006 Confidence 99.81% Date Thu Jan 5 12:04:54 GMT 2012 Rank 48 Aligned Residues 123 % Identity 15% Template c3gz6A_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																	.	.
Query SS confidence										.	.	.																																	.	.
Query Sequence		R	T	I	V	C	P	L	I	.	.	.	Q	N	D	G	A	Y	L	L	C	K	M	A	D	D	R	G	V	F	P	G	Q	W	A	I	S	G	G	G	V	E	P	G	.	.	E	R	I	E	E	A	L	R	R	E	I	R	E	E	L	G	E	Q	L	L	L	T	E	I	T	P	W	T	F	S	D	D	I	R	T
Query Conservation										.	.	.																																	.	.
Alig confidence										.	.	.													.	.																			.	.																													.	.	.	.	.	.	.
Template Conservation																									.	.																																																	.	.	.	.	.	.	.
Template Sequence		L	T	V	D	A	V	L	F	T	Y	H	D	Q	Q	L	K	V	L	L	V	Q	R	S	.	.	N	H	P	F	L	G	L	W	G	L	P	G	G	F	I	D	E	T	C	D	E	S	L	E	Q	T	V	L	R	K	L	A	E	K	T	A	V	V	P	P	Y	I	E	Q	L	C	T	V	.	.	.	.	.	.	.
Template Known Secondary structure													S	S	S										.	.	S	S	S	S	T	T					S						T	T	T			S														S	S			S									.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.																																																	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	Y	A	D	G	R	K	E	E	I	Y	M	I	Y	L	I	F	D	C	V	S	A	N	R	E	V	K	I	N	E	E	F	Q	D	Y	A	W	V	K	P	E	D	L	V	H	Y	D	L	N	V	A	T	R	K	T	L	R
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	G	N	N	S	R	D	A	R	G	W	S	V	T	V	C	Y	T	A	L	M	S	Y	Q	A	C	Q	I	Q	I	A	S	V	S	D	V	K	W	W	P	L	A	D	V	L	Q	M	P	L	A	F	D	H	L	Q	L	I	E
Template Known Secondary structure		.			S	S	S		T	T	S													S									S		S	S										T	T	S		B	S	T	T
Template Predicted Secondary structure		.
Template SS confidence
			91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions