Job Description P52006 Confidence 99.47% Date Thu Jan 5 12:04:54 GMT 2012 Rank 78 Aligned Residues 117 % Identity 21% Template c2j8qB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. Resolution 2.3 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																		.	.	.																																														.	.
Query SS confidence																		.	.	.																																														.	.
Query Sequence		M	R	Q	R	T	I	V	C	P	L	I	Q	N	D	G	A	.	.	.	Y	L	L	C	K	M	A	D	D	R	G	V	F	P	G	Q	W	A	I	S	G	G	G	V	E	P	G	E	R	I	E	E	A	L	R	R	E	I	R	E	E	L	G	E	Q	.	.	L	L	L	T	E	I	T	P	W	T	F	S	D	D
Query Conservation																		.	.	.																																														.	.
Alig confidence					.													.	.	.											.	.	.	.	.	.																														.	.
Template Conservation					.																										.	.	.	.	.	.
Template Sequence		M	R	R	.	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	G	T	T	F	.	.	.	.	.	.	F	K	L	P	G	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	R	Q	D	D	W	V	I	D	D	C	I	G	N	W	W	R	P	N
Template Known Secondary structure		S			.										S	S	S										S	T	T		.	.	.	.	.	.				S						T	T																																		S
Template Predicted Secondary structure					.																										.	.	.	.	.	.
Template SS confidence
		76	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		I	R	T	K	T	Y	A	D	G	R	K	E	E	I	Y	.	.	M	I	Y	L	I	F	D	C	V	S	A	N	R	E	V	K	I	N	E	E	F	Q	D	Y	A	W	V	K	P	E	D	L	V	H
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		F	E	P	P	Q	Y	P	Y	I	P	A	H	I	T	K	P	K	E	H	K	K	L	F	L	V	Q	L	Q	E	K	A	L	F	A	V	P	K	N	Y	K	L	V	A	A	P	L	F	E	L	Y	D
Template Known Secondary structure		S	S	S			B	S	S			T	T		S			S												S	S							T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions