Job Description P0A6E4 Confidence 100.00% Date Thu Jan 5 11:02:56 GMT 2012 Rank 2 Aligned Residues 387 % Identity 30% Template c1vl2C_ PDB info PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution Resolution 1.65 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		G	Q	R	I	G	I	A	F	S	G	G	L	D	T	S	A	A	L	L	W	M	R	Q	K	G	A	V	P	Y	A	Y	T	A	N	L	G	Q	P	D	E	E	D	Y	D	A	I	P	R	R	A	M	E	Y	G	A	E	N	A	R	L	I	D	C	R	K	Q	L	V	A	E	G	I	.	A	A	I	Q	C	G	A
Query Conservation																																																																										.
Alig confidence																																								.	.																																	.
Template Conservation																																								.	.
Template Sequence		K	E	K	V	V	L	A	Y	S	G	G	L	D	T	S	V	I	L	K	W	L	C	E	K	G	F	D	V	I	A	Y	V	A	N	V	G	Q	K	.	.	D	D	F	V	A	I	K	E	K	A	L	K	T	G	A	S	K	V	Y	V	E	D	L	R	R	E	F	V	T	D	Y	I	F	T	A	L	L	G	N	A
Template Known Secondary structure											S	S													T	T										S	S			.	.														T		S															T						T	T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	N	T	T	G	G	L	T	Y	F	N	T	T	P	L	G	R	A	V	T	G	T	M	L	V	A	A	M	K	E	D	G	V	N	I	W	G	D	G	S	T	Y	K	G	N	D	I	E	R	F	Y	R	Y	G	L	L	T	N	A	E	L	Q	I	Y	K	P	W	L	D	T	D	F	I	D	E	L	G	G	R
Query Conservation
Alig confidence						.	.	.	.																																																																					.	.
Template Conservation						.	.	.	.																																																																					.	.
Template Sequence		M	Y	E	G	.	.	.	.	R	Y	L	L	G	T	A	I	A	R	P	L	I	A	K	R	Q	V	E	I	A	E	K	E	G	A	Q	Y	V	A	H	G	A	T	G	K	G	N	D	Q	V	R	F	E	L	T	Y	A	A	L	N	P	N	L	K	V	I	S	P	W	K	D	P	E	F	L	A	K	.	.	F	K
Template Known Secondary structure			B	T	T	.	.	.	.	T	B																							T		S								T	T	S	S														T	T	S					G	G	G								.	.	T
Template Predicted Secondary structure						.	.	.	.																																																																					.	.
Template SS confidence
		80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	M	S	E	F	M	I	A	C	G	F	D	Y	K	M	S	V	E	K	A	Y	S	T	D	S	N	M	L	G	A	T	H	E	A	K	D	L	E	Y	L	N	S	S	V	K	I	V	N	P	I	M	G	V	K	F	W	D	E	S	V	K	I	P	A	E	E	V	T	V	R	F	E	Q	G	H	P	V	A	L
Query Conservation
Alig confidence																																																		.	.
Template Conservation																																																		.	.
Template Sequence		T	D	L	I	N	Y	A	M	E	K	G	I	P	I	K	V	S	K	K	R	P	Y	S	E	D	E	N	L	M	H	I	S	H	E	A	G	K	L	E	D	P	A	H	I	P	D	E	D	.	.	V	F	T	W	T	V	S	P	K	D	A	P	D	E	E	T	L	L	E	I	H	F	E	N	G	I	P	V	K	V
Template Known Secondary structure												T					S	S				S	S						S	S						S	G	G	G	G	S	T	T	S				G	G	.	.	G			S	S			T	T	T	S		S	S										T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		250						.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		N	.	.	.	.	.	G	K	T	F	S	D	D	V	E	M	M	L	E	A	N	R	I	G	G	R	H	G	L	G	M	S	D	Q	I	E	N	R	I	I	E	A	K	S	R	G	I	Y	E	A	P	G	M	A	L	L	H	I	A	Y	E	R	L	L	T	G	I	H	N	E	D	T	I	E	Q	Y	H	A	H	G
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.						.
Template Conservation													.
Template Sequence		V	N	L	K	D	G	T	E	K	T	D	.	P	L	E	L	F	E	Y	L	N	E	V	G	A	K	N	G	V	G	R	L	D	M	V	E	N	R	F	I	G	I	K	S	R	G	V	Y	E	T	P	G	A	T	I	L	W	I	A	H	R	D	L	E	G	I	T	M	D	K	E	V	M	H	L	R	D	M	L	A
Template Known Secondary structure				T	T	T						S	.															T	T											S	S	S	S																										S
Template Predicted Secondary structure													.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	G	R	L	L	Y	Q	G	R	W	F	D	S	Q	A	L	M	L	R	D	S	L	Q	R	W	V	A	S	Q	I	T	G	E	V	T	L	E	L	R	R	G	N	D	Y	S	I	L	N	T	V	S	E	N	L	T	Y	K	P	E	R	L	T	M	E	K	G	D	S	V	F	S	P	D	D	R	I	G	Q
Query Conservation
Alig confidence																						.																								.																.	.	.	.	.	.	.	.	.
Template Conservation																						.																								.																.	.	.	.	.	.	.	.	.
Template Sequence		P	K	F	A	E	L	I	Y	N	G	F	W	F	S	P	E	M	E	F	L	.	L	A	A	F	R	K	A	Q	E	N	V	T	G	K	V	T	V	S	I	Y	K	G	N	.	V	M	P	V	A	R	Y	S	P	Y	S	L	Y	N	P	.	.	.	.	.	.	.	.	.	G	G	F	D	A	T	D	S	K	G	F
Template Known Secondary structure											T		T	T	S							.									T	T											T	T		.									T	T	S	T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.																								.																.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370										.	.	.	.	.	.	.	.	.	380	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	M	R	N	L	D	I	T	D	T	R	E	K	L	F	G	Y	A	K
Query Conservation
Alig confidence									.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		I	N	I	H	A	L	R	.	.	.	.	.	L	K	V	H	Q	L	V	K
Template Known Secondary structure									.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		390	.	.	.	.	.	.						.	.	.	400	.	.	.	.