Job Description P0A6E4 Confidence 26.13% Date Thu Jan 5 11:02:56 GMT 2012 Rank 236 Aligned Residues 87 % Identity 21% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20					.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure															.	.	.	.								.	.
Query SS confidence															.	.	.	.								.	.
Query Sequence		L	P	V	G	Q	R	I	G	I	A	F	S	G	.	.	.	.	G	L	D	T	S	A	A	.	.	L	L	W	M	R	Q	K	G	A	V	P	Y	A	Y	T	A	N	L	G	Q	P	D	E	E	D	Y	D	A	I	P	R	R	A	M	E	Y	G	A	E	N	A	R	L	I	D	C	R	K	Q	L	V	A	E	G
Query Conservation															.	.	.	.								.	.
Alig confidence															.	.	.	.								.	.																								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	.	.	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S	.	.											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	I	Q	C	G	A	F	H	N	T	T	G	G	L	T	Y	F	N	T	T	P	L	G	R	A	V	T	G	T	M	L	V	A	A	M	K	E	D	G	V	N	I	W	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S				T	T													T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions