Job Description P0A6E4 Confidence 100.00% Date Thu Jan 5 11:02:56 GMT 2012 Rank 3 Aligned Residues 381 % Identity 30% Template c1kh2D_ PDB info PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp Resolution 2.30 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90
Predicted Secondary structure																								.																																																	.
Query SS confidence																								.																																																	.
Query Sequence		R	I	G	I	A	F	S	G	G	L	D	T	S	A	A	L	L	W	M	R	Q	K	.	G	A	V	P	Y	A	Y	T	A	N	L	G	Q	P	D	E	E	D	Y	D	A	I	P	R	R	A	M	E	Y	G	A	E	N	A	R	L	I	D	C	R	K	Q	L	V	A	E	G	I	.	A	A	I	Q	C	G	A	F
Query Conservation																								.																																																	.
Alig confidence																								.															.	.																																	.
Template Conservation																																							.	.
Template Sequence		K	I	V	L	A	Y	S	G	G	L	D	T	S	I	I	L	K	W	L	K	E	T	Y	R	A	E	V	I	A	F	T	A	D	I	G	Q	G	.	.	E	E	V	E	E	A	R	E	K	A	L	R	T	G	A	S	K	A	I	A	L	D	L	K	E	E	F	V	R	D	F	V	F	P	M	M	R	A	G	A	V
Template Known Secondary structure									S	S																									S	S	S	S	.	.														T		S															T							T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	T	T	G	G	L	T	Y	F	N	T	T	P	L	G	R	A	V	T	G	T	M	L	V	A	A	M	K	E	D	G	V	N	I	W	G	D	G	S	T	Y	K	G	N	D	I	E	R	F	Y	R	Y	G	L	L	T	N	A	E	L	Q	I	Y	K	P	W	L	D	T	D	F	I	D	E	L	G	G	R	H
Query Conservation
Alig confidence					.	.	.	.																																																																		.	.	.	.
Template Conservation					.	.	.	.																																																																		.	.	.	.
Template Sequence		Y	E	G	.	.	.	.	Y	Y	L	L	G	T	S	I	A	R	P	L	I	A	K	H	L	V	R	I	A	E	E	E	G	A	E	A	I	A	H	G	A	T	G	K	G	N	D	Q	V	R	F	E	L	T	A	Y	A	L	K	P	D	I	K	V	I	A	P	W	R	E	W	S	F	.	.	.	.	Q	G	R	K
Template Known Secondary structure		B	T	T	.	.	.	.	T	B			T	T	T	T																	T		S								T	T	S	S														T	T													.	.	.	.		S
Template Predicted Secondary structure					.	.	.	.																																																																		.	.	.	.
Template SS confidence
		80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	S	E	F	M	I	A	C	G	F	D	Y	K	M	S	V	E	K	A	Y	S	T	D	S	N	M	L	G	A	T	H	E	A	K	D	L	E	Y	L	N	S	S	V	K	I	V	N	P	I	M	G	V	K	F	W	D	E	S	V	K	I	P	A	E	E	V	T	V	R	F	E	Q	G	H	P	V	A	L	N
Query Conservation
Alig confidence															.	.	.	.	.																														.	.
Template Conservation															.	.	.	.	.																														.	.
Template Sequence		E	M	I	A	Y	A	E	A	H	G	I	P	V	.	.	.	.	.	P	P	Y	S	M	D	A	N	L	L	H	I	S	Y	E	G	G	V	L	E	D	P	W	A	E	P	P	K	G	.	.	M	F	R	M	T	Q	D	P	E	E	A	P	D	A	P	E	Y	V	E	V	E	F	F	E	G	D	P	V	A	V	N
Template Known Secondary structure										T					.	.	.	.	.									S	S						S	G	G	G	G		T	T	S				T	T	.	.			S	S	S			G	G	G	S		S	S										T	T						T
Template Predicted Secondary structure															.	.	.	.	.																														.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	F	S	D	D	V	E	M	M	L	E	A	N	R	I	G	G	R	H	G	L	G	M	S	D	Q	I	E	N	R	I	I	E	A	K	S	R	G	I	Y	E	A	P	G	M	A	L	L	H	I	A	Y	E	R	L	L	T	G	I	H	N	E	D	T	I	E	Q	Y	H	A	H	G	R	Q	L	G	R	L
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		G	E	R	L	S	.	P	A	A	L	L	Q	R	L	N	E	I	G	G	R	H	G	V	G	R	V	D	I	V	E	N	R	F	V	G	M	K	S	R	G	V	Y	E	T	P	G	G	T	I	L	Y	H	A	R	R	A	V	E	S	L	T	L	D	R	E	V	L	H	Q	R	D	M	L	S	P	K	Y	A	E	L
Template Known Secondary structure		T					.															T	T											T	T	S																											S
Template Predicted Secondary structure							.
Template SS confidence
		230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	Q	G	R	W	F	D	S	Q	A	L	M	L	R	D	S	L	Q	R	W	V	A	S	Q	I	T	G	E	V	T	L	E	L	R	R	G	N	D	Y	S	I	L	N	T	V	S	E	N	L	T	Y	K	P	E	R	L	T	M	E	K	G	D	S	V	F	S	P	D	D	R	I	G	Q	L	T	M	R	N	L
Query Conservation
Alig confidence																.																								.																				.	.	.	.	.	.
Template Conservation																.																								.																				.	.	.	.	.	.
Template Sequence		V	Y	Y	G	F	W	Y	A	P	E	R	E	A	L	.	Q	A	Y	F	D	H	V	A	R	S	V	T	G	V	A	R	L	K	L	Y	K	G	N	.	V	Y	V	V	G	R	K	A	P	K	S	L	Y	R	Q	D	L	V	S	.	.	.	.	.	.	G	Y	D	Q	K	D	A	E	G	F	I	K	I	Q	A	L
Template Known Secondary structure					T		T	T	S							.									T	T											T	T		.									T	T					T	T	T	T		.	.	.	.	.	.
Template Predicted Secondary structure																.																								.																				.	.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		411	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	T	D	T	R	E	K	L	F
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		R	.	L	R	V	R	A	L	V	E
Template Known Secondary structure			.								T
Template Predicted Secondary structure			.
Template SS confidence
		386		.	.	.	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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