Job Description P32695 Confidence 93.93% Date Thu Jan 5 11:50:18 GMT 2012 Rank 311 Aligned Residues 240 % Identity 14% Template c3fluD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis Resolution 2.00 Å

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		13	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.											.	.	.											.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.											.	.	.											.	.	.	.	.	.
Query Sequence		F	S	V	A	P	M	L	D	W	T	D	.	.	.	.	.	.	R	H	C	R	Y	F	L	R	L	L	.	.	.	S	R	N	T	L	L	Y	T	E	M	.	.	.	.	.	.	V	T	T	G	A	I	I	H	G	K	G	D	Y	L	A	Y	S	E	E	E	H	P	V	A	L	Q	L	G	G	S	D	P	A	A
Query Conservation													.	.	.	.	.	.											.	.	.											.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.											.	.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	V	A	L	I	T	P	M	N	Q	D	G	S	I	H	Y	E	Q	L	R	D	L	I	D	W	H	I	E	N	G	T	D	G	I	V	A	V	G	T	T	G	E	S	A	T	L	S	V	E	E	H	T	A	V	I	E	A	V	V	K	H	V	A	K	R	V	P	V	I	A	G	T	G	A	N	N	T	V	E
Template Known Secondary structure										B		T	T	S		B															T	T							S	S	T	T	T	T	G	G	G	S																	T	T	S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Q	C	A	K	L	A	E	A	R	G	Y	D	E	I	N	L	N	V	G	C	P	S	D	R	V	Q	N	G	M	F	G	A	C	L	M	G	N	A	Q	L	V	A	D	C	V	K	A	M	R	D	V	V	S	I	P	V	T	V	K	T	R	I	G	I	D	D	Q	D	S	Y	E	F	L	C	D	F	I	N
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence		A	I	A	L	S	Q	A	A	E	K	A	G	A	D	Y	T	L	S	V	V	P	Y	Y	N	K	P	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	E	G	I	Y	Q	H	F	K	T	I	A	E	A	T	S	I	P	M	I	I	Y	N	V	P	G	R	T	V	V	S	.	.	.	M	T	N	D	T	I	L
Template Known Secondary structure													T		S									S	S			.	.	.	.	.	.	.	.	.	.	.	.															T			S												S	S		.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110													.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	S	G	K	G	E	C	E	M	F	I	I	H	A	R	K	A	W	L	S	G	L	S	P	K	E	N	R	E	I	P	P	L	D	Y	P	R	V	Y	Q	L	K	R	D	F	P	H	L	T	M	S	I	N	G	G	I	K	S	L	E	E	A	K	A	H	L	Q	H	M	D	G	V	M	V	G	R	E	A	Y
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		R	L	A	E	I	P	N	I	V	G	V	K	E	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	G	S	N	I	E	L	I	N	R	A	P	E	G	F	V	V	L	S	G	D	D	H	T	A	.	.	L	P	F	M	L	C	G	G	H	G	V	I	T	V	A	A	N	A
Template Known Secondary structure				T	T	S	T	T								S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S		T	T								G	G	G		.	.						T	T							S	G	G	G	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	P	G	I	L	A	A	V	D	R	E	I	F	G	S	S	D	T	D	A	D	P	V	A	V	V	R	A	M	Y	P	Y	I	E	R	E	L	S	Q	G	T	Y	L	G	H	I	T	R	H	M	L	G	L
Query Conservation
Alig confidence			.																.	.	.
Template Conservation			.																.	.	.
Template Sequence		A	.	P	K	L	F	A	D	M	C	R	A	A	L	Q	G	D	.	.	.	I	A	L	A	R	E	L	N	D	R	L	I	P	I	Y	D	T	M	F	C	E	P	S	P	A	A	P	K	W	A	V	S	A	L
Template Known Secondary structure			.														T		.	.	.																T	T	T	T	S	S	S	T	T										T
Template Predicted Secondary structure			.																.	.	.
Template SS confidence
		210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions