Job Description P0AAB2 Confidence 97.52% Date Thu Jan 5 11:12:25 GMT 2012 Rank 19 Aligned Residues 135 % Identity 19% Template c3fdfA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. Resolution 3.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.																													.	.	.	50	.	.
Predicted Secondary structure																																							.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	L	V	V	C	V	G	N	I	C	R	S	P	T	A	E	R	L	L	Q	R	Y	H	P	E	L	K	V	E	S	A	G	L	G	A	L	.	.	.	V	G	K	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	A	I	S	V
Query Conservation																																							.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.														.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		A	V	A	V	V	C	S	S	N	X	N	R	S	X	E	A	H	N	F	L	A	K	.	.	K	G	F	N	V	R	S	Y	G	T	G	E	R	V	K	L	P	G	X	A	F	D	K	P	N	V	Y	E	F	G	T	K	Y	E	D	I	Y	R	D	L	E	S	K	D	K	E	F	Y	T	Q	N	G	L	L	H	X
Template Known Secondary structure								S	S	S	S	S												.	.	T	T							B		S	S	S					S	S	T	T	T							T	T	S														T	T					T	S
Template Predicted Secondary structure																								.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		53	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		A	A	E	.	H	Q	L	S	L	E	G	H	C	A	R	Q	I	S	R	R	L	C	R	N	Y	D	L	I	L	T	M	E	K	R	H	I	E	R	L	C	E	M	A	P	E	M	R	G	K	V	M	L	F	G	H	W	D	N	E	C	E	I	P	D	P	Y	R	K	S	R	E	T	F	A	A	V	Y	T	L	L
Query Conservation					.
Alig confidence					.															.	.	.	.																																				.
Template Conservation																				.	.	.	.																																				.
Template Sequence		L	D	R	N	R	R	I	K	K	C	P	E	R	F	Q	D	T	K	.	.	.	.	E	Q	F	D	I	I	V	T	V	E	E	R	V	Y	D	L	V	V	X	H	X	E	S	X	E	S	V	D	N	R	P	V	H	V	L	.	N	V	D	V	V	D	N	A	E	D	A	L	X	G	A	F	V	I	T	D	X	I
Template Known Secondary structure							T	T		S	S			B	G	G	G			.	.	.	.				S					S	S													S				T	T								.						S	S	T	T
Template Predicted Secondary structure																				.	.	.	.																																				.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		132										.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	.	.	R	S	A	R	Q	W	A	Q	A	L	N	A	E
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	X	X	A	K	S	T	D	L	D	N	D	I	D	E	L	I	Q	E	F	E	E	R
Template Known Secondary structure						T		S		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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