Job Description P75864 Confidence 100.00% Date Thu Jan 5 12:15:14 GMT 2012 Rank 6 Aligned Residues 295 % Identity 26% Template c3c0kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase Resolution 2.00 Å

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		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.				.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		D	S	K	P	A	M	V	A	E	D	Y	T	N	R	L	R	K	N	L	K	K	F	E	K	W	A	R	Q	E	G	I	E	C	Y	R	L	Y	D	A	D	.	.	.	L	P	E	Y	N	V	A	V	D	R	Y	A	D	W	V	V	V	Q	E	Y	A	P	P	K	T	I	D	A	H	K	A	R	Q	R	L	F	D
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.			.	.																				.	.	.	.	.	.	.
Template Conservation																																															.	.																				.	.	.	.	.	.	.
Template Sequence		D	P	S	E	S	I	D	I	A	F	F	S	R	R	L	Q	Q	A	Q	K	W	R	D	W	L	A	Q	K	D	G	L	D	S	Y	R	L	I	A	G	E	S	D	G	L	P	.	.	G	I	T	I	D	R	F	G	N	F	L	V	L	Q	L	L	S	A	G	.	.	.	.	.	.	.	A	E	Y	Q	R	A	A
Template Known Secondary structure			T	T				S																							T		S							G	G	G	G	T		T	.	.	T							T	T								S			.	.	.	.	.	.	.				T
Template Predicted Secondary structure																																															.	.																				.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.							.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		I	I	A	A	T	I	S	V	L	G	I	A	P	N	K	L	V	L	K	T	R	.	.	.	.	.	.	E	R	Q	K	G	K	N	Q	Y	Q	K	L	G	E	K	G	E	F	L	E	V	T	E	Y	N	A	H	L	W	V	N	L	T	D	Y	L	D	T	G	L	F	L	D	H	R	I	A	R	R	M	L	G	Q
Query Conservation																							.	.	.	.	.	.
Alig confidence												.	.										.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		L	I	S	A	L	Q	T	L	Y	P	.	.	E	C	S	I	Y	D	R	S	D	V	A	V	R	K	K	E	G	X	E	L	T	Q	G	P	V	T	G	E	L	P	P	A	L	L	P	I	E	E	H	G	X	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R
Template Known Secondary structure											T	.	.	T										T					T	T										S					S	S						T	T							T	T	T	S	S	T	T	S	S		G	G	G
Template Predicted Secondary structure												.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.				.	.	.	.	.	610	.	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		M	S	K	G	K	D	F	L	N	L	F	S	Y	T	G	S	A	T	V	H	A	G	L	G	G	A	R	S	T	T	T	V	D	M	S	R	T	Y	L	E	W	A	E	R	N	L	R	L	N	G	L	T	G	R	A	H	R	L	I	Q	A	D	C	L	A	W	L	R	E	.	.	.	A	N	E	Q	F	D	L	I
Query Conservation																																																																							.	.	.
Alig confidence																																																																							.	.	.
Template Conservation
Template Sequence		Y	V	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	X	G	G	C	S	Q	V	V	S	V	D	T	S	Q	E	A	L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I
Template Known Secondary structure				T	T							T		T	T	T									T	T		S							S															T	T			G	G	G						S												T	T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.							.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		F	I	D	P	P	T	F	S	N	S	K	R	M	E	D	A	F	D	V	Q	R	D	H	L	A	L	M	K	D	L	K	R	L	L	R	A	G	G	T	I	M	F	S	N	N	K	R	G	F	R	M	D	L	.	.	.	.	.	.	D	G	L	A	K	L	G	L	K	A	Q	E	I	T	Q	K	T	L	S	Q	D
Query Conservation																																																							.	.	.	.	.	.
Alig confidence														.	.																																								.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		V	X	D	P	P	K	F	V	E	N	K	S	.	.	Q	L	X	G	A	C	R	G	Y	K	D	I	N	X	L	A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	X	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	Q	A	A	D
Template Known Secondary structure						S	S		S	S	T	T		.	.	S	S	S				T												T														T	T																		T													T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		687	.	.	690	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	R	N	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	P	V	I	A	T
Template Known Secondary structure		S				T	T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions