Job Description P75864 Confidence 99.82% Date Thu Jan 5 12:15:14 GMT 2012 Rank 21 Aligned Residues 338 % Identity 15% Template c3bt7A_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna (uracil-5-)-methyltransferase; PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue Resolution 2.43 Å

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		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	A	L	I	A	L	H	S	L	L	G	R	I	M	K	N	Q	F	G	G	W	N	L	S	L	F	S	A	S	P	D	L	L	S	C	L	Q	L	R	A	D	K	Q	Y	K	A	K	N	G	P	L	D	C	V	Q	K	N	Y	H	V	A	E	S	T	P	D	S	K	P	A	M	V	A	E	D	Y	T	N	R
Query Conservation
Alig confidence																		.																.	.	.	.	.																							.	.
Template Conservation																		.																.	.	.	.	.																							.	.
Template Sequence		E	A	Q	L	A	E	K	V	V	R	L	Q	S	M	M	A	.	P	F	S	D	L	V	P	E	V	F	R	S	P	V	S	.	.	.	.	.	H	Y	R	M	R	A	E	F	R	I	W	H	D	G	D	D	L	Y	H	I	I	F	.	.	D	Q	Q	T	K	S	R	I	R	V	D	S	F	P	A	A	S	E	L
Template Known Secondary structure																	T	.	T	T												S	S	.	.	.	.	.	S		B	S										T	T								.	.		T	T	T							S			T	T	B
Template Predicted Secondary structure																		.																.	.	.	.	.																							.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	K	N	L	K	K	F	E	K	W	A	R	Q	E	G	I	E	C	Y	R	L	Y	D	A	D	L	P	E	Y	N	V	A	V	D	R	Y	A	D	W	V	V	V	Q	E	Y	A	P	P	K	T	I	D	A	H	K	A	R	Q	R	L	F	D	I	I	A	A	T	I	S	V	L	G	I	A	P	N	K	L	V
Query Conservation
Alig confidence																										.	.	.	.	.																					.	.	.	.	.	.	.																		.	.
Template Conservation																										.	.	.	.	.																					.	.	.	.	.	.	.																		.	.
Template Sequence		I	N	Q	L	M	T	A	M	I	A	G	V	R	N	N	P	V	L	R	H	K	L	F	Q	.	.	.	.	.	I	D	Y	L	T	T	L	S	N	Q	A	V	V	S	L	L	Y	H	K	K	.	.	.	.	.	.	.	L	D	D	E	W	R	Q	E	A	E	A	L	R	D	A	L	R	.	.	A	Q	N	L	N
Template Known Secondary structure														T	T						T	T				.	.	.	.	.							T	T										S	S		.	.	.	.	.	.	.																		.	.	T	T	T
Template Predicted Secondary structure																										.	.	.	.	.																					.	.	.	.	.	.	.																		.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.						.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		L	K	T	R	E	R	Q	K	G	K	N	Q	Y	Q	K	L	G	E	K	G	E	F	L	E	V	T	E	Y	N	A	H	L	W	V	N	L	T	D	Y	L	D	T	G	L	F	L	D	H	R	I	A	R	R	M	L	G	Q	M	S	.	K	G	K	D	F	L	N	L	F	S	Y	T	G	S	A	T	V	H	A	G
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		V	H	L	I	G	R	A	T	K	T	K	I	E	L	D	Q	D	Y	I	D	E	R	L	P	V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A
Template Known Secondary structure									T	T					S	S		S								B	T	T	B								T	T	S				S	B															T	T	T			S						S		T	T	S							G
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.																.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	G	A	R	S	T	T	T	V	D	M	S	R	T	Y	L	E	W	A	E	R	N	L	R	L	N	G	L	T	G	R	A	H	R	L	I	Q	A	D	C	L	A	W	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	E	Q	F	D	L	I	F	I	D	P	P	T	F	S	N	S
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation				.																												.	.																																												.	.	.
Template Sequence		R	N	.	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	.	.	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	.	.	.	R	S
Template Known Secondary structure		G	G	.	S	S																						T	T			.	.	S								S								S	S					T	T	G	G	G	S		G	G	G												.	.	.	T	T
Template Predicted Secondary structure				.																												.	.																																												.	.	.
Template SS confidence
		230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.				.	.
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	M	E	D	A	F	D	V	Q	R	D	H	L	A	L	M	K	D	L	K	R	L	L	R	A	G	G	T	I	M	F	S	N	N	K	R	G	F	R	M	D	L	D	G	L	A	K	L	G	L	K	A	Q	E	I	T	Q	K	T	L	S	Q	D	F	A	R	N	R	Q	I	H	N	C	W	L	I	T	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																								.													.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																								.													.	.	.
Template Sequence		G	L	D	S	E	T	E	K	M	V	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	.	T	H	K	V	E	R	L	A	L	F	D	Q	.	.	.	F	P	Y	T	H	H	M	Q	C	G	V	L	L	T	A
Template Known Secondary structure												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							S															.													.	.	.	S	T	T	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																								.													.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.														.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions