 |
Job Description | P04994 | Confidence | 89.78% | Date | Thu Jan 5 10:58:33 GMT 2012 |
Rank | 76 | Aligned Residues | 80 |
% Identity | 20% | Template | d3ulla_ |
SCOP info | OB-fold
| Nucleic acid-binding proteins
| Single strand DNA-binding domain, SSB
|
Resolution | 2.40 |
|
 |
  |   |
24 | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | H | E | M | G | Q | V | W | I | S | G | E | I | S | N | . |
. |
. |
F | T | Q | P | A | S | G | H | W | Y | F | T | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | D | D | T | A | Q | V | R | C | A | M | F | R | N | S | N | R | R | V | . |
T | F | R | P | Q | H | G | Q | Q | V | L | V | R | A | N | I | T |
Query Conservation |   |
  |   |   |   |   |   |
|   |
|   |
|
|
|
|   | . | . | . |   |   |   |   |   |
|
|
|   |
|
|   |
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |
|   |
|   |
|   |
|   |
Template Sequence |   |
E | R | S | L | N | R | V | H | L | L | G | R | V | G | Q | D | P | V | L | R | Q | V | E | G | K | N | P | V | T | I | F | S | L | A | T | N | E | M | W | R | S | D | V | S | Q | K | T | T | W | H | R | I | S | V | F | R | P | G | L | R | D | V | A | Y | Q | Y | V | K | K | G | S | R | I | Y | L | E | G | K | I | D |
Template Known Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
| S |
|
|  |  |  |
|
| T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| S | T | T |  |  |  |  |  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
  |
  |   |
88 | . | 90 | |
|
|
. | . | . | |
|
|
|
. | . | . | . | . | . | 100 | . | . | . |
Predicted Secondary structure |   |
 |  |
| . | . | . |
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
| . |
. |
. |
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Y | E | . |
. |
. |
P | R | G | . |
. |
. |
. |
D | Y | Q | I | I | V | E | S | M | Q |
Query Conservation |   |
  |
|   | . | . | . |   |   |
| . | . | . | . |   |   |   |
|   |
|   |   |
|   |
Alig confidence |   |
|
|
| . | . | . |
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |
|   |   |
|   |
Template Sequence |   |
Y | G | E | Y | M | D | K | N | N | V | R | R | Q | A | T | T | I | I | A | D | N | I | I |
Template Known Secondary structure |   |
|
|
|  |  | S | S | S | S |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|