Job Description P04994 Confidence 81.53% Date Thu Jan 5 10:58:33 GMT 2012 Rank 147 Aligned Residues 91 % Identity 20% Template d1smyf2 SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain Resolution 2.70

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		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	G	H	E	T	D	V	T	I	A	D	F	V	A	D	L	R	A	P	T	P	S	A	A	A	E	V	V	S	R	N	Q	Q	E	L	L	R	Q	V	Q	S	T	R	Q	R	L	E	M	A	M	D	Y	Y	L	A	N	R	T	R	R	F	T	Q	I	H	H	R	L	Q	Q	Q	H	P	Q	L	R	L	A
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	I	G	D	E	K	D	S	F	Y	G	D	F	I	P	D	E	H	L	P	S	P	V	D	A	A	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	G	E	E	V	G	A	F	F	G
Template Known Secondary structure			B		T	T	T	S	S		B	G	G	G	G	S			S	S	S			T							.	.	.	.	.	.	.	.	.	.	.	.												T	T	S														T	T					T	T	T	S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.													.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	Q	T	M	L	E	R	L	Q	K	R	M	S	F	A	L	E	N	Q	L	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	R	E	R	I	R	Q	I	E	N	K	A	L	R	K	L	K	Y	H	E	S	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions