Job Description P04994 Confidence 93.56% Date Thu Jan 5 10:58:33 GMT 2012 Rank 32 Aligned Residues 75 % Identity 11% Template c3k8aA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:putative primosomal replication protein; PDBTitle: neisseria gonorrhoeae prib Resolution 2.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.			.	.	.	.	50	.													.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.							.	.							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.							.	.							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	Q	V	W	I	S	G	E	I	S	N	F	.	.	.	T	Q	P	A	S	G	.	.	H	W	Y	F	T	L	.	.	.	.	.	.	.	.	.	.	.	.	K	D	D	T	A	Q	V	R	C	A	M	F	R	N	S	N	R	R	V	T	F	R	P	Q	H	G	Q	Q	V	L	V	R	A	N	I	T	L	Y
Query Conservation															.	.	.							.	.							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.							.	.							.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																																																.	.
Template Sequence		T	N	L	V	S	L	A	A	L	I	E	K	A	F	P	I	R	Y	T	P	A	G	I	P	V	L	D	I	I	L	K	H	E	S	W	Q	E	E	N	G	Q	Q	C	L	V	Q	L	E	I	P	A	R	I	L	G	R	Q	A	E	E	W	Q	.	.	Y	R	Q	G	D	C	A	T	V	E	G	F	L	A	Q	K
Template Known Secondary structure																					T	T	S																	T	T																					S	T	.	.	T		T	T												S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		90	.	.		.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		E	P	R	.	G	D	Y	Q	I	I	V	E	S	M	Q
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		S	R	R	S	L	M	P	M	L	R	I	Q	N	I	K
Template Known Secondary structure		S	S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions