 |
Job Description | P04994 | Confidence | 35.97% | Date | Thu Jan 5 10:58:33 GMT 2012 |
Rank | 346 | Aligned Residues | 62 |
% Identity | 21% | Template | c3bi8A_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum
|
Resolution | 1.96 Å |
|
 |
  |   |
183 | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | I | V | R | A | I | E | L | A | N | Q | R | N | E | C | D | V | L | I | V | G | R | G | G | G | S | L | E | D | L | W | S | F | N | D | E | . |
. |
. |
. |
. |
. |
R | V | A | R | A | I | F | T | S | R | I | P | V | V | S | A | V | G | H | E | T | D | V | T | I | A | D | F | V |
Query Conservation |   |
  |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|
|
|
|   |
|
|
|   |   |
|
|   |   | . | . | . | . | . | . |   |
|
|
|
|
|   |   |   |   |
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |
| . |
|   |
|
|   |   | . | . | . |   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|
Template Sequence |   |
D | K | L | S | E | L | I | E | W | H | I | K | S | K | . |
T | D | A | I | I | V | . |
. |
. |
C | G | T | T | G | E | A | T | T | M | T | E | T | E | R | K | E | T | I | K | F | V | I | D | K | V | N | K | R | I | P | V | I | A | G | T | G | S | N | N | T | A | A | S | I | A | M | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | T | T | . |
|
|  |  |  |  | . | . | . | S | S | G | G | G | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  |
|
|
| S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  | . | . | . |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | |
. | . | . | 40 | . | . | |
|
|
. | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|