Job Description P04994 Confidence 22.39% Date Thu Jan 5 10:58:33 GMT 2012 Rank 486 Aligned Residues 84 % Identity 15% Template c2vk2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein Resolution 1.20 Å

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		139	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure												.																.	.
Query SS confidence												.																.	.
Query Sequence		A	H	C	V	G	V	I	T	S	K	.	T	G	A	A	L	H	D	I	L	H	V	L	K	R	R	.	.	D	P	S	L	P	V	I	I	Y	P	A	A	V	Q	G	D	D	A	P	G	Q	I	V	R	A	I	E	L	A	N	Q	R	N	E	C	D	V	L	I	V	G	R	G	G	G	S	L	E	D	L	W	S
Query Conservation												.																.	.
Alig confidence												.																.	.												.	.	.	.																			.													.	.	.	.	.	.
Template Conservation																																									.	.	.	.																			.													.	.	.	.	.	.
Template Sequence		P	L	T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	.	.	.	.	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	.	V	D	A	I	F	I	A	P	V	V	A	T	.	.	.	.	.	.
Template Known Secondary structure														S																		T									.	.	.	.	T	T																T	.		S							S	S	S	S	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.																			.													.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	D	E	R	V	A	R	A	I	F	T	S	R	I	P	V	V	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	G	W	E	P	V	L	K	E	A	K	D	A	E	I	P	V	F	L
Template Known Secondary structure		.	S											T	T
Template Predicted Secondary structure		.
Template SS confidence
			71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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