Job Description P04994 Confidence 49.20% Date Thu Jan 5 10:58:33 GMT 2012 Rank 273 Aligned Residues 101 % Identity 24% Template c1z2zB_ PDB info
PDB header: lyaseChain: B: PDB Molecule: probable trna pseudouridine synthase d;
PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1
Resolution 2.60 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
31 . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70 . . . . . . .
Predicted Secondary structure
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Query SS confidence
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Query Sequence
W I S G E I S N F T Q P A S G .
H W Y F T L .
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K D D T A Q V R .
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C A M F R N S N R R V T F R P Q H G
Query Conservation
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Alig confidence
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Template Conservation
Template Sequence
F I V K E I T N R E E G E E G K Y L I V E L T K R D W D T H H L T R T L S R I L Q V S Q K R I S V A G T K D K R A L T T Q K I S I F D T D A S E I E K I H L K D
Template Known Secondary structure
S B S S S S S S T T T S S S S S T T T T
Template Predicted Secondary structure
Template SS confidence
33 . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . .
78 . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 .
Predicted Secondary structure
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Query SS confidence
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Query Sequence
Q Q V L V R A N I T L Y E P R G .
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D Y Q I I V E S M Q P A G E G L L Q Q K Y E Q L K A K L Q A E G .
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L F D Q Q Y
Query Conservation
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Alig confidence
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Template Conservation
Template Sequence
I E L K V L G R S R K S V E L G D L W G N D F R I T V R N I E N S P E E T E A L L K K T T D E I L A Q G G V P N F F G I Q R
Template Known Secondary structure
S S T T S S T S G G G
Template Predicted Secondary structure
Template SS confidence
113 . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . .
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre serverKelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]
